Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq253 98.7 1e-15 seq1368 91.5 2e-13 seq583 82.4 9e-11 >seq253 Length=360942 Score = 98.7 bits (108), Expect = 1e-15 Identities = 252/374 (67%), Gaps = 16/374 (4%) Strand=Plus/Minus Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250 ||| || || ||||||||||| | | || ||||| | ||| | || || ||||| Sbjct 67712 ACGGTCGAAACGACCTGGACGTAATAATGCAGGGTCAAGAACATCTGCACGGTTAGTCGC 67653 Query 9251 GGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTG 9307 || ||||| | ||||||| ||||| |||||||||||||| || ||| | ||| Sbjct 67652 TGCAATGACGATAATACCT---TCATTGCCTTCAAAACCATCCATTTCAACCAACATTTG 67596 Query 9308 GTTAATAGTTTGTTCCCGTTCATCAT--TCGCTGGCATACCACCAGCACTGCGTTGCTTT 9365 ||| | ||||| || |||||||| | ||| || || ||| || | ||||| Sbjct 67595 GTTCAATGTTTGCTCGCGTTCATCGTGACCGC-CGCCTA-AACCTGCGCCACGTTGACGA 67538 Query 9366 CCCACGGCATCAATCTCATCAATGAAGACAATACATG--GTTGATTTTCGCGGGCGATTT 9423 || || |||||||||||||| || |||| ||| || | | || |||| | || || Sbjct 67537 CCGACCGCATCAATCTCATCGATAAAGATAATGCAAGGCGCTGCTTTTTTC--GCTTGTT 67480 Query 9424 CAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 9483 | || | ||| ||||| | || || ||||| |||||||| || || |||| | Sbjct 67479 CGAACATATCACGAACACGAGATGCACCAACACCGACAAACATTTCAACGAAGTCAGAAC 67420 Query 9484 CGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9542 | ||| || | | || || || || | |||||| || || ||| || || | || Sbjct 67419 CTGAA-ATAGTAAAAAATGGTACTTTTGCTTCACCAGCGATCGCTTTAGCAAGCAATGTT 67361 Query 9543 TTACCCGTACCTGG 9556 ||||| ||||| || Sbjct 67360 TTACCTGTACCCGG 67347 >seq1368 Length=130540 Score = 91.5 bits (100), Expect = 2e-13 Identities = 171/246 (70%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 7051 TGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTTG 7110 |||| || ||| || || ||||| || || ||||||||| || |||||| | | |||| Sbjct 18318 TGTTCGCCTGCAATGGTATACTCTTTAATCACGAATCACCGCGAAGAGGTGAAAATTTTG 18377 Query 7111 TCACAAAGAAGATTACC-GAGG-GTATCAAACAA--ATCATGAAGGGTGAAAAGGAGTTC 7166 | ||| || |||||| || ||| |||| | ||| | || | || ||| | | Sbjct 18378 TAACACGTAAAATTACCCGATCAGTAGCAAAAATCTATC-TCAA---TCAATTGGAATAC 18433 Query 7167 ATTGAATTGGGTAACATAAACGCGGAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAA 7226 ||||||||||||| || | | | | ||||||||||| || | ||| ||||| || Sbjct 18434 TTTGAATTGGGTAATTTAGATTCAAAACGTGATTGGGGTCATGCTATGGATTATGTAGAG 18493 Query 7227 GCCATGTGGCTCATGCTTCAACAAGAGGAAGCCGACGAATATGTAGTAGCAACGGGTGAG 7286 ||||||||| | ||| | ||||| ||| || || || ||||| | || || || || Sbjct 18494 GCCATGTGGATGATGTTGCAACAGGAGAAACCCTCAGATTATGTCATTGCCACCGGAGAA 18553 Query 7287 ACCCAT 7292 || ||| Sbjct 18554 ACGCAT 18559 >seq583 Length=2816 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| | ||||||||||| ||||||||| ||||| ||| || || ||||| | || Sbjct 311 GTGCATACCCTCATCTCTGGAAATAAGCTCATTACTGAATGTTAAACCAGGCATCAAGCC 252 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACA 117402 |||||||||||||| |||| || |||||| || |||||||| |||||| ||| Sbjct 251 ACGCTTCTTCAACCAGAAAATGGCAGCGAATGAACCACTGAAGAAGACACCCTCGACA 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589968167036120