Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_015269.1 Length=118351 Score E Sequences producing significant alignments: (Bits) Value seq87 140 2e-28 seq1596 86.0 5e-12 >seq87 Length=489008 Score = 140 bits (154), Expect = 2e-28 Identities = 219/308 (71%), Gaps = 4/308 (1%) Strand=Plus/Minus Query 46143 ATGAGTGTGCATACATGGACGTAAGCAACCCTTTGAGAACTCTCCCGGATTCCAGAAGGT 46202 |||||| |||||||| || |||||||| ||| || || || || ||||| | || || Sbjct 413308 ATGAGTATGCATACAAGGCCGTAAGCATCCCATTTCAAATTCACCTGGATTATAAAACGT 413249 Query 46203 TAGAATTTCCCCACGATCATCAATGCCCTTTTTCAGATTATGATAAATCTTGGCTAGTTG 46262 | ||||| | || |||||||| || ||||| | |||| | | || || || Sbjct 413248 AATGATTTCAGCGCGGTCATCAATACCATTTTTTAAGTTATTAACCACTTTTTTAAGCTG 413189 Query 46263 GTCAAACATAAG-ACCATCGGAATTAGTCCACTGA-CGTCCTTGAACACCATAGACTCGT 46320 || | || | |||||| | ||| ||| || ||||| |||||||| || || Sbjct 413188 ATCGAG-ATGCGTACCATCAGGCCGCTGCCA-TGAGCGCCCTTGGACACCATAAACGCGC 413131 Query 46321 CCCATATCATCCTCACCTTTACGGTATGGATTGTCTAGCCAAGCTGAGTTTTCATTTGCA 46380 ||||||||||| ||||||||||||| ||| || | ||||||||| || ||||| ||| Sbjct 413130 CCCATATCATCTTCACCTTTACGGTGTGGGTTATTCAGCCAAGCTTGATTGTCATTCGCA 413071 Query 46381 TTAGCATTCCATGTGTTAACACCAATAGCGCGGAATTGTGCTGCTGAGTCATACCCACGT 46440 || ||||||||||| ||| || || | |||||||| ||||| ||||| || ||| Sbjct 413070 TTTGCATTCCATGTATTACAGCCGATTTCACGGAATTGAGCTGCATTATCATAACCGCGT 413011 Query 46441 AGATACCC 46448 || || || Sbjct 413010 AGGTAACC 413003 >seq1596 Length=248270 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 27389 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCGTTAAATCGAACA 27448 || || |||||| |||||||||| | ||| ||||| |||||| | |||||| || || Sbjct 48922 GTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAGAGTTAAAACGCACC 48863 Query 27449 GCATAGCCAGAGACACGGATAGTCAATTGAGGATA 27483 ||||| || || ||||||||||||| ||| ||||| Sbjct 48862 GCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378590495930216