Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1619 123 3e-23 >seq1619 Length=3001179 Score = 123 bits (136), Expect = 3e-23 Identities = 348/520 (67%), Gaps = 22/520 (4%) Strand=Plus/Minus Query 159271 TGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAG 159330 ||||| |||||||| | ||| ||||| || || || || ||||| |||||||||| Sbjct 2321566 TGTGAGATCACAGGTTACGATAAAATATCCTTCCAGCCGAATTCAGGAGCACAGGGTGAA 2321507 Query 159331 TATGCAGGACTGTTAGCAATCCA-AGCATACCATCAAGGATCAGGA-GATGATAAAAGAA 159388 ||||| || || ||| || | ||| ||||| || | | | || | | | | | Sbjct 2321506 TATGCTGGTCTAAGAGCTATACGCAGC-TACCACGAAC-ACCGCAATGAGGGTCACCGCA 2321449 Query 159389 ATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAG 159448 || | || | || ||| ||||| |||||||| |||||||||||||| |||||| | Sbjct 2321448 ATATTTGCCTAATTCCAATTTCAGCTCATGGAACCAATCCTGCATCAGCTCAGATGGCTG 2321389 Query 159449 GGATGAAAGTTGTAGGTGTCAAGTGTGATGAT----GATGGCAACATAGACATCAAAGAT 159504 | |||||||||| | ||| | || | ||||| | ||| || || || Sbjct 2321388 GAATGAAAGTTGA----GCCAATTCGTATTCTAGCAGATGGAAGCATTGATATGGCGCAT 2321333 Query 159505 CTAGAGAAGAAAGCAATCATGAATACATTTGAA--CTGTCATGTATTATGATTACATATC 159562 | | || ||| || ||| || | | | || |||||| ||||||| ||||||| Sbjct 2321332 TTGCGTGATAAGGCA-TC-TGAGCACGCTCGTAATCTATCATGTCTTATGATCACATATC 2321275 Query 159563 CATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTG--TTCATGA 159620 | || || || ||||| || || | | | | || || | |||| ||||| | Sbjct 2321274 CCTCAACTATGGGCGTATTCGAGGAAACCGT--GGCCGACATTTGCGATTTAATTCAT-A 2321218 Query 159621 GA-ATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAA 159679 || |||| || || || ||||||||||| || ||| | ||||| || || || ||| Sbjct 2321217 GACATGGGGGCCAAGTGTATCTTGATGGCGCCAATATGAATGCCCAAGTGGGCCTATGTC 2321158 Query 159680 AACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTC 159739 || |||| ||||| ||||| | || |||| | || || || |||||||||| Sbjct 2321157 GCCCCGGTGATTATGGAAGTGATGTTTCCCACTTAAATCTGCACAAAACTTTCTGTATTC 2321098 Query 159740 CACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||||| ||||| ||||| || | ||||| ||||| || Sbjct 2321097 CACATGGTGGTGGTGGTCCAGGAATGGGTCCAATTGGAGT 2321058 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 158550 AGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAG 158609 ||||| || |||||| | || || | | ||| |||| || | || || ||||| | Sbjct 2322317 AGATATGGATGGTAATGATGCCTATCGCCTTGCATTACAAACCCGTGAACAACATATTCG 2322258 Query 158610 AAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGG 158669 |||||| ||||| || ||||| || || || || ||||| | || ||||||||||| | Sbjct 2322257 AAGAGATAAAGCCACAAGTAATATTTGTACCGCCCAAGCTTTACTTGCTAATATGTCAGC 2322198 Query 158670 GTTCTATGCAGCATATCATGGTGCAGATGGACT 158702 | | |||||| |||||||| | || ||||| Sbjct 2322197 GATGTATGCAATCTATCATGGCCCCGAAGGACT 2322165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588038608353680