Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq964 158 3e-33 seq1304 156 9e-33 seq1190 138 3e-27 >seq964 Length=291957 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| ||||| || |||||||||||||| ||||||| | ||| | || ||||| Sbjct 215393 AACCAAGTGGAGAGTAGATTCTTTTTGAATATTATAATCGGACAAAGTGCGTCCGTCTTC 215334 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | || ||||| || || || || |||||||| ||||| ||||| || || || ||||| Sbjct 215333 CAATTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCCTTATCTTG 215274 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| ||| || || ||||| || |||||| ||| || |||||||| | ||||| Sbjct 215273 AATTTTAGCCTTAACATTTTCAATCGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTT 215214 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || ||||| || ||||| | |||||||| Sbjct 215213 GCCAGTTAAAGTCTTCACGAAGATTTGCATTT 215182 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | || ||||| || || || || || |||||||| | ||| || | Sbjct 216873 GAGACGCAATACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCCGAAAGGGTGCG 216814 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | || ||||| || ||||| | |||||||||||||| ||||| ||||| Sbjct 216813 TCCATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTC 216754 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || ||||| || || ||||||||| |||||||| || ||| ||| ||||| | || Sbjct 216753 CTTATCTTGGATCTTAGCCTTGACGTTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGT 216694 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || ||||| ||||||||||| ||||| | ||||| Sbjct 216693 GATGGTTTTTCCGGTCAAAGTTTTCACGAAGATCTGCAT 216655 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | |||||| || || ||||||||||| || ||||||| | ||| | ||||| Sbjct 215852 CAATACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGGCCATC 215793 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||| ||||| ||||| || | || ||||| ||||| ||||| ||||||||||| Sbjct 215792 TTCCAACTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTC 215733 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| ||||| || || || || || || |||||| ||| || || | |||| || Sbjct 215732 TTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACCTCCAATGTAATTGT 215673 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || ||||| ||||| | |||||| Sbjct 215672 TTTACCCGTTAATGTTTTAACGAAAATTTGCAT 215640 Score = 140 bits (154), Expect = 7e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 || || |||||||| ||||| || ||||| || | |||| || | |||||||| || || Sbjct 217085 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAG-GTACGACCATCTTCCAGTTG 217027 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| |||||||| | ||||| || ||||| ||||| ||||| || || || ||||| Sbjct 217026 TTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCCTGGATTTT 216967 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| |||||||||||||| || ||| ||| ||||| | || | || || || || Sbjct 216966 AGCCTTTACGTTCTCAATGGTATCGGAAGGTTCGACTTCCAAAGTGATGGTTTTGCCGGT 216907 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| ||||| ||||| | |||||| Sbjct 216906 CAAGGTTTTAACGAAGATTTGCAT 216883 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || |||||||| ||||| ||||| | | || | ||| ||||| | || || || Sbjct 215608 GTAGATTCTTTTTGTATATTATAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTGCCA 215549 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || | |||||||| ||||| || || |||||||||||||||||||| || Sbjct 215548 GCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTA 215489 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| || || ||| || ||||| | || | || || || ||||| || Sbjct 215488 ACATTTTCAATAGTATCAGAAGGCTCAACTTCCAAAGTGATGGTTTTGCCAGTCAATGTC 215429 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 215428 TTAACAAAGATTTGCAT 215412 >seq1304 Length=336898 Score = 156 bits (172), Expect = 9e-33 Identities = 158/203 (78%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTAC 195001 |||||| || ||||| || ||||| |||| |||| || | |||||||| | || |||| Sbjct 274202 AGTGGATTCCTTTTGGATGTTGTAGTCGGACAAG-GTGCGACCATCTTCCAATTGTTTAC 274260 Query 195002 CTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCT 195061 | |||||||| | |||||||| ||||| || || |||||||||||||| ||||| || Sbjct 274261 CAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGGATTTTGGCCT 274320 Query 195062 TGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAG 195121 |||| || ||||||||||| ||| || ||||| | ||||| ||||| || || |||| Sbjct 274321 TGACATTTTCAATGGTGTCGGAAGGCTCAACTTCCAAGGTAATGGTCTTACCAGTTAAAG 274380 Query 195122 TTTTTACGAACACTTGCATTTAT 195144 |||| ||||| | ||||| ||| Sbjct 274381 TTTTGACGAAGATCTGCATCTAT 274403 >seq1190 Length=275307 Score = 138 bits (152), Expect = 3e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||| | |||||| |||||||||||||||||||| | ||||| | ||||| Sbjct 186885 CAATACCAAGTGCAAAGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTACGGCCATC 186826 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || || || ||||| || | |||||||| ||||| ||||| ||||||||||| Sbjct 186825 TTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTC 186766 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||| || ||||| || ||||| ||||| || || || ||||| || | || Sbjct 186765 CTGAATCTTGGCTTTGACATTTTCAATAGTGTCGGACGGCTCGACCTCAAGAGTGATGGT 186706 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || || | ||||| || || | |||||| Sbjct 186705 CTTACCCGTTAGGGTTTTGACAAAAATCTGCATT 186672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109457249305871