Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_015457.1 Length=165919 Score E Sequences producing significant alignments: (Bits) Value seq253 107 2e-18 seq1596 100 3e-16 seq613 86.0 7e-12 >seq253 Length=360942 Score = 107 bits (118), Expect = 2e-18 Identities = 440/682 (65%), Gaps = 25/682 (4%) Strand=Plus/Plus Query 41506 ACACCAAGATTATTACGTCCATCAAGAATTTCATTACCAGTCGAATCTTTCCATACGCTC 41565 ||||| | ||||||||| |||||| |||||| | ||| | |||| | || | Sbjct 104886 ACACCTAAATTATTACGGCCATCATGAATTTGTTGGCCATTT---TCTTCGTAGACACCT 104942 Query 41566 AAGAAACTACGGCAACCCATTGGAG----AAACAGGAACAGATGAACCAGTGATAGCTTT 41621 ||||| || ||||| |||||||| | |||| || | | | || || | |||| Sbjct 104943 AAGAAGCTGCGGCAGCCCATTGGCGTTTTAAAC--GAGCCCGTTA--CATCGACAACTTT 104998 Query 41622 ATTGTTCTTAGCCGAAATGATGTCAGGATACATTCTTTTGCTTGCGCATTCTAAAGCAAG 41681 | | ||| || |||||| |||||||| | |||||| || || ||||| || | Sbjct 104999 GT----CATAGTTTAA--GATGTCGGGATACATGCGTTTGCTCGCACACTCTAATGCTAA 105052 Query 41682 CTGCTTAATATCATAGTTCGGATCGTCTTTATAAAGATTAACACCTTCTTCAACGAACAT 41741 ||| || ||||||||||| ||||| | | | |||||| |||| || || | || Sbjct 105053 CTGTTTGATATCATAGTTAGGATCACCATATTGGTGATTAAGGCCTTTTTTAAT-AGCAA 105111 Query 41742 A-ACAAGTTTAGGGAAAATAGGAGTTATCCCGTCACGACCAAGACCTTTAATACGATTTT 41800 | || | ||||||||||| | |||| | | | ||| | || ||||| |||| Sbjct 105112 ACACTAATTTAGGGAAAACGGCAGTTTTACGATTTTTACCTAACCCAGCGATACGGTTTT 105171 Query 41801 TCAGAATTGCTTTCTGAATCATTCGTTCAGTCCAGTCA-GTTCCCGTACCAAATGTAATT 41859 | ||||| | || || |||| ||| | || | | || || |||||| || Sbjct 105172 TTAGAATGGATTGTTGGATCAAGCGTGCT-TCTTGCGATGTGCCTAAACCAAACCCAAAG 105230 Query 41860 GTTACAAAAGGCGTTTGCCCGTTTGAACTAAAAAGAGTATTTACTTCATATTCATAAGCT 41919 ||||| || || ||||| || || | || || || || ||||| |||||| | | Sbjct 105231 GTTACGAAGGGGGTTTGACCATTGGCGGTATGCAGTGTGTTCACTTCGTATTCAAGGGAT 105290 Query 41920 TGAAATGCATCGTATACGTCTTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCG 41979 || || |||||||| |||||||| |||| | |||||| |||||| | Sbjct 105291 TGGAAGGCATCGTAACATTCTTTTTCGGTTTGGCTATCAGCATAGCCTTTCGCATCTTCA 105350 Query 41980 ATTTGCCATTTTTCTGCATCTTCAATATGTTTTGCATAGGTGCGTTTAACATAAGGAGAA 42039 || ||| || || || | ||||||| ||||| || | |||||||||| | Sbjct 105351 ATGCCCCAATTGATCGCTGTTTTTAGATGTTTTTCATAGCTGATGTGGACATAAGGAGCA 105410 Query 42040 AGTACTTTATCTACATTCGCAAAA--GTCGTTCCGCCGTATTGATGGGAAGCAACCTGTG 42097 || | || ||| | | || | || || || || || |||| ||| || || | Sbjct 105411 AGGATTTCATCAA--TGCGGTTGATGGTGGTGCCACCATAAATATGGCTAGCTACTTGAG 105468 Query 42098 CAGTAATTTGTGCCATAATTGCAGTAGCAACACCGATTGATTTAGGAGTTTCAATCTGTG 42157 | ||||||| || | | ||| || ||| ||||||||||||| || || | | Sbjct 105469 CGATAATTTGGGCTGTCACTGCGGTGGCAGTGGAAATTGATTTAGGAGGCTCTATTTCGG 105528 Query 42158 CATTACCGAGCTTAAATCCGTT 42179 ||||||| | ||||| || || Sbjct 105529 CATTACCCATTTTAAACCCATT 105550 >seq1596 Length=248270 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 59814 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 59873 || || ||||||| |||||||| |||||||||| ||||||||||||||| || || Sbjct 48922 GTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAGAGTTAAAACGCACC 48863 Query 59874 GCATAACCGGATACACGGATGGTCAGCTGCGGATA 59908 |||||||| ||||||||||| ||||| || ||||| Sbjct 48862 GCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 >seq613 Length=31296 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/112 (79%), Gaps = 6/112 (5%) Strand=Plus/Minus Query 68527 CGCTCTACCAAACTGAGCTACACGGAGTAAATTAAATTGGAGCGGATAATGAGAATCGAA 68586 ||||||||||| |||||||| | || | || ||||||||| | | |||||||| Sbjct 4254 CGCTCTACCAA-CTGAGCTATATC-AGCACATC---TTGGAGCGGGCAGCGGGAATCGAA 4200 Query 68587 CTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCCATTATACGATATCCGC 68637 | | ||||||||| ||||||| |||||||||| ||||||||||||| |||| Sbjct 4199 CCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 4148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530801433970920