Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_015933.1 Length=72917 Score E Sequences producing significant alignments: (Bits) Value seq410 242 2e-59 >seq410 Length=72445 Score = 242 bits (268), Expect = 2e-59 Identities = 693/1050 (66%), Gaps = 29/1050 (3%) Strand=Plus/Minus Query 67995 CTCTTCCGGGAAGTACATCTTACCAGCTTTGAACCATGGAACTACCAGGTTAAAACGTGA 68054 ||||| || ||| | ||||| |||| ||| |||| || ||| || | ||||| Sbjct 22943 CTCTTTAGGAAAGAATATCTTTCCAGTAGCAAACAATGGCACAGCCATCTTCATACGTGT 22884 Query 68055 CAGTTTAGAGGTTACAGGACGGATGCCTGGCT---TACCACCCTCAGAAGATGCAAAGTT 68111 ||||||| || ||||| | ||||| || | ||| || |||| ||||||| Sbjct 22883 CAGTTTATCTGTCACAGGTCTAATGCCCGGTTCTTTACGACTACCAGAGCGTGCAAAGGA 22824 Query 68112 AAAGAAGACATTACGGTTAATCATTTCTT--TCTGAAGGAGTGATA----TGAATCCACC 68165 |||| | | |||| |||| |||| ||| | | | | |||| |||| Sbjct 22823 AAAGTATA------GGTTCCTCATCTCTTGTTCTCTACGTATCCAACTAATGAAACCACT 22770 Query 68166 TTGCTGTCCTGTAATTTCGACACCAACGTTTTGTGGTTGGTATTCCTGAACCAGACGGAA 68225 |||||| ||||| | ||| |||||||| ||||| | || |||||||| | ||| Sbjct 22769 TTGCTGACCTGTTACTTCTACACCAACAGACTGTGGGTTATAAATTTGAACCAGTCTGAA 22710 Query 68226 CAAGTCGTCAAAGTTTTTATCCATAAGCTGACGATTAGCCACACCGTCAACCCAGAACCA 68285 || || | || ||| ||||| || || | ||| || ||| || |||| Sbjct 22709 TAAATCATTAAGGTTAGCGTCCATCTCTTGTTTCTTGCAAATACCATCTACCAAGTACCA 22650 Query 68286 ATCTCCATTAGAACTGTAAGCCCAAACTGATATGACGCTGTAGTCACTGGTCTGTTTCTC 68345 || || | | | || |||||||| ||||| ||||||||| ||| ||| Sbjct 22649 ATTACCTTGATAGTCATACGCCCAAACAATAATGACACTGTAGTCAGCACTCTCTTTAGA 22590 Query 68346 CGAAGTAGCAAAGTCTGTTGTAATGTAATAGTTGTAG--CAGGACTTCATCCTTAACAGT 68403 || |||||||||||| ||||||||||| | || | | | | | | | | | Sbjct 22589 AGAGACAGCAAAGTCTGTGGTAATGTAATAATGATAATTCTGTAACTGTGTCATGAGATT 22530 Query 68404 TGTTGCCTGCTGTACCACTTAATCTCACTA-TCCTGAACAAGACGTTCATCTTCAGAACT 68462 ||| | ||| ||| ||| || | || |||| | | || || ||||| Sbjct 22529 TGTA--CGAGAGTAATACTGTATC-CATGACTCTTGAATCATTCTCTCTTCATCAGAGGC 22473 Query 68463 AATACGAAGCATAAGTTCCTGGTAGAAACCAGCCAGCTTACCG-GTCTTAACTGCCATAT 68521 |||||| | ||||||||| |||| ||| | | | || || | || |||| | Sbjct 22472 AATACGTAACATAAGTTCTTGGTT-AAATGATTTAATTCGCCCAGTTCTCACAGCCAACT 22414 Query 68522 CGTATTGGGCTTTGATATAGTCATACGAGAAACGGTCATCCCATGCACCCTGAAACTCTT 68581 | || ||| || | | | ||||||||||| || ||| ||||||||| ||| || | Sbjct 22413 CATACTGGCTCTTAACAAATTCATACGAGAATCGCTCAGGCCATGCACCAACAAATTCAT 22354 Query 68582 CT-CTACTACATGGGAACTTCTCGCACACAGGCCATACGTTGACATCCCATGCACCGGAC 68640 | || | ||| ||||| ||| || | ||| | ||||| || | ||| | || ||| Sbjct 22353 GTTCTTC-ACAAGGGAAGCGCTCACAGATAGGGTAAACGTTAACGTACCAACCGCCTGAC 22295 Query 68641 TCAACTGCTTCAATGATGATGTCTTCCTTATTAAAGGGAGTACCATTGAAGATTACTTTA 68700 ||||| || ||| | | || | ||||||||| || |||||||| |||| | || Sbjct 22294 TCAACGGCCTCATATAGAACATCATTCTTATTAAAAGGCGTACCATTAAAGACAATCTTT 22235 Query 68701 CGGCGTGTTGGGTCAAGAGCATGGTTCACACCTTTATAGACAGTATCCTTAATAGCTTCC 68760 |||||||||||| ||||||| ||||| ||||| ||||| |||||||| |||||| Sbjct 22234 TTCTTTGTTGGGTCAAGGGCATGGTCAACACCGTTATACACAGTGTCCTTAATCGCTTCC 22175 Query 68761 ATGCTTGTCTTAGAGTTAGCATCACCATCACTAATCAAGTCATCCAGTACGCATAGTGTC 68820 || ||| ||||| |||||||| | ||||| | |||||||| ||||| || || Sbjct 22174 ATTTCTGTTTTAGACTTAGCATCCTCGTCACTCACTAAGTCATCAAGTACAGCCAGGGTA 22115 Query 68821 GGACGTTTACCATATATCTTCGTACCACGAAGACCTGTCTTAGCACCAAA-TAACTTAAC 68879 ||||| |||||||| || || ||||||| | |||||||||||||||||| ||| || Sbjct 22114 GGACGCTTACCATACATTTTATTACCACGGATACCTGTCTTAGCACCAAACAAACCTA-- 22057 Query 68880 ACCCAGAC-GATGACCTTCTGCATTACGGAACTCTAACAGGTTATCTGTAAAAATAGCTT 68938 | ||| || |||||| || ||||| |||||| | | ||||| ||||| | || Sbjct 22056 ATCCAAACTTATGACCATCAGCATTCACGAACTCAATACGCTTATCCGTAAACTTCGCCA 21997 Query 68939 CGGGTATCCACTGCTGAAGGAACTCACTATTCTTGTATCGGAACTCAATGTTCTTACGTG 68998 |||| | | | ||||||| || || | ||||| | || | |||||| | | Sbjct 21996 CGGGCACGAATTTCTGAAGGGTCTGGCTTTGTAAGTATCTGTTTTCTAAGTTCTTTCTTA 21937 Query 68999 CAGACTTAGCACCGTTATCCATTGAGTCAG 69028 ||| || ||||| ||||||||||||| Sbjct 21936 GGTTCTTGGCTCCGTTGTCCATTGAGTCAG 21907 Score = 176 bits (194), Expect = 2e-39 Identities = 662/1017 (65%), Gaps = 35/1017 (3%) Strand=Plus/Minus Query 54301 GCAACAGTCTTAATCAGAGCCAGACGTTCTGGACGTTTAACCAGAATACCGTAGTACCAC 54360 ||||| || ||||||| |||| ||| || | || || | |||||||| ||||| Sbjct 35300 GCAACTGTTTTAATCATCGCCAAACGCTCAGAGCGAAGAATTAACATACCGTACCACCAC 35241 Query 54361 TTGATGGAACTGAAACCAGTCTCGCCATACGGGTCATTACGGTCAGCAGTTTCTCGACCA 54420 || || |||| ||||| | ||||| ||||||| |||||||||||||| | ||| Sbjct 35240 AACATAGAGGTGAATCCAGTTTGACCATATGGGTCATGACGGTCAGCAGTTTGTTCCCCA 35181 Query 54421 GGCATCTTAGTCAT-GATGGAGAACTTA-ACAGACTTACCATCAGTCTGGAAACCAATGG 54478 |||| ||||| || || | ||||||| || ||| || ||| | || |||| | Sbjct 35180 GGCACTTTAGTAATTGACTG-GAACTTATACTGACGG-CCTGCAGCTTCAAAGCCAACAG 35123 Query 54479 TAGAGAAGGAGTCATCACCAACTACCAGCATCGGGAACACGTCATAGTGTTCTTCGCCAC 54538 ||| || || || ||||||| |||| ||| ||||| | ||||| || ||| || Sbjct 35122 TAGTAAATGAACCACCACCAACAACCATCATTGGGAAGATATCATA---TTTATCGTCAG 35066 Query 54539 TA--ACCATAGAAGAACGGTAACCTGGGTTAGTAGAGACTTGTGCACCAGCACCTGCCCA 54596 | || ||||| ||| | | | ||||| || ||||| ||| || | Sbjct 35065 TGTTACGATAGATA----GTATCTTTG-TTAGTT---ACCGCAGCACCTTTACCAGCAAA 35014 Query 54597 ATGCA--GCATCTCAGGAACCTGGATAATACGGAACTTGTCGATACAACCAATTTCACCA 54654 || |||| || | || | |||||| | | | | |||||| ||||||| Sbjct 35013 GTGTTTCGCATTGAAGTTCACA--ATTACACGGAATGGGCCAACAGAACCAACTTCACCA 34956 Query 54655 TTCATCAGAGTACCAGCGTCAGCATAGTGCTGAACCTCAATGAATGCTTTGTTACCGAAC 54714 | | | ||| || |||||||||| || || ||| || ||| ||||| || Sbjct 34955 TGTGCGATATGACCTGCCGCAGCATAGTGTTGTACAGGAATAAACGCTGGATTACCAAAG 34896 Query 54715 AGGTCTTTCATCGCTTTCAGTTCTGGA-ACTAGTTCAGAACCAACGTACATTACACGAGT 54773 |||||||| | | | | | | | ||||| ||| | ||||| ||||| Sbjct 34895 TTATCTTTCAT-GTTACGAATAGTAGTCAGCAGTTCGTTACCGATATACATATAACGAGC 34837 Query 54774 AC-CGCCA-AGTACTTTGGTATCGGTAAGTTTAGAACCAGTGATGATAGTAGTCTGAGTC 54831 | || | ||| ||| ||||| || | | |||||| |||| | ||| | | Sbjct 34836 AGACGGAATAGT--TTTCGTATCAGTGAATGGAGAACCTTTGATAACGTCAGTGTTACGT 34779 Query 54832 GGAGTACGGTTCTCAGTAAGAATCTGGTCAAGACGCATCAGGTTCTTATAAGAAACTACA 54891 || |||||||| || ||||||| | || | ||| ||| |||| ||||| |||| || Sbjct 34778 GGTGTACGGTTTTCGTTAAGAATATCATCTAAACGTTGCAGATTCTCATAAGTAACTTCA 34719 Query 54892 GACGGGGTA--GCACCTTCACCCGTGATGGTAGCATCGGAAGTAGCAGCACCTGCATACA 54949 || | || ||||||||||| ||||| | |||| || |||| ||| ||| Sbjct 34718 GA--GATTACCGCACCTTCACCAGTGATTTCATCATCTTTCAATGCCACACCAGCAAACA 34661 Query 54950 GTACAGTACCAGCAGCAGCCAACAGGTCTTTCTGGAGAACAGCTTCAGTCAGCTGTACAG 55009 | |||||||||| | |||| || | | ||| | ||||||| | ||||| | Sbjct 34660 TGATAGTACCAGCACCTTGTAACAACTCAATTTCGAGCATGTCTTCAGTGATTTGTACCG 34601 Query 55010 CACCGTTCATCAGTTCACGAGACAGGTGTTCTTTCAG--TTGGTCATCAGAATCAAAGTC 55067 |||| | | ||||||||| || |||| |||| | || |||| ||||||||| Sbjct 34600 CACCTGTTACCAGTTCACGCTGCATATGTTTCATCAGCATCGGG--TCAGTATCAAAGTC 34543 Query 55068 CAGGGACTCTTGAGTAAATTCGTAGAAGAAACCGAACTTATGAATGGAACCTTCACGAGA 55127 | || |||| ||| | || ||||| ||| | ||| ||||||||||| Sbjct 34542 GATAGAGTCTTTAGTCCACTCACGGAAGATACCCATTTTAGAAATGGAACCTTTGATTTC 34483 Query 55128 CAGACGGGTAAAGCCTACACGGTTAACACGACCACCGTTCTCTGTCAGCAGAGGCAGTTT 55187 ||||||| | || |||||||||||||||||||| | || || |||| ||| Sbjct 34482 CAGACGGACAGTACCAACACGGTTAACACGACCACCTTCTTCACCCATGTACGGCATTTT 34423 Query 55188 AGAAGTGATGTTACCAACGTCTCGGGAAGAACCATACAGGTTACCATTAACGATGGTAGC 55247 | | ||| |||||||||||| |||||||| || | |||||||| ||| || | Sbjct 34422 ATCAAGGATTTTACCAACGTCTTTAGAAGAACCGTATAAGTTACCATCTTTGATTTTAAC 34363 Query 55248 ACCATTAGCATCAATACCCTGGTCGTTGATGTTCTTATCGTCAAGCAGTGGAACGTA 55304 ||| |||||| ||||| |||||||| | ||| || || |||| ||||| ||| Sbjct 34362 GCCAGAAGCATCGATACCTTGGTCGTTCACGTTACGGTCATCCAGCAATGGAATGTA 34306 Score = 93.3 bits (102), Expect = 2e-14 Identities = 117/157 (75%), Gaps = 8/157 (5%) Strand=Plus/Minus Query 57519 TTCTTCCATAGGGTCTGGCTGTGGTTGCCAGGTACGTAACTCATGAGCCAGGTCAGGCAT 57578 ||||| ||| ||||| ||||||||||| ||||||||| | ||||| ||||||||||| Sbjct 32136 TTCTTGCATTGGGTCAGGCTGTGGTTGGTAGGTACGTAGTTTGTGAGCAAGGTCAGGCAT 32077 Query 57579 ACGTTTA---AGTTCTGCAATCTTAGCTACGAGAGATAA-CGTAATAGTTTGGTCAACCG 57634 |||| | ||||||||| | || | || | ||| | |||||| ||||| || | Sbjct 32076 ---TTTACGCAATTCTGCAATATCTGCCA-GAATGTTAAGGGCAATAGTCTGGTCTACGG 32021 Query 57635 TATTACCCAATGTTTGAACCATGAAGCTCAGGTCTTG 57671 ||||||||| || || | |||||| ||| ||||| Sbjct 32020 TATTACCCATAGTCTGTAACATGAATGCCAGTTCTTG 31984 Score = 89.7 bits (98), Expect = 2e-13 Identities = 177/254 (70%), Gaps = 10/254 (4%) Strand=Plus/Minus Query 28995 ACCTGCTGTAAAACAGCTTCGTCACA-AGCTGCTTA-TGGCTGGTTGTGGTGCTATTAA- 29051 |||||| || ||||| | ||||| | || | ||| | || || |||||||| | || Sbjct 56929 ACCTGCCGTGAAACAAATGCGTCATACAGTT--TTACTAGCCGGATGTGGTGCGCTAAAT 56872 Query 29052 CTTACAGATTGATGAGATTGGTTCCAACCTC--ATTGCCAACGTTGAAGTTCTTAACCTG 29109 ||| || | |||||||||||||| ||| || | || || |||| | | | Sbjct 56871 CTTGAAG-TCGATGAGATTGGTTCAAACATCCAAAAGCAAA--TTGATGCGTTAGGCACA 56815 Query 29110 TTCCTTGAGTTGTATGACCAGGGGAAAGTAAAACAGAAGTTAACCAAGAACACTGCTGAA 29169 |||||||| || |||||| ||| ||| |||| || |||| || |||||| |||| Sbjct 56814 TTCCTTGAATTATATGACGTAGGGTTAGTTAAACCTAAACTAACAAAAAACACTTCTGAC 56755 Query 29170 AGTATTCGTGGTGAAGAACTGGATGGTAAAACTCCTGCTAACCTGCTGCTGTTCGGTACT 29229 |||| ||| |||||| | || || | ||| || ||||| || || ||||||| ||| Sbjct 56754 AGTACACGTAATGAAGATATTGACGGAAGAACACCAGCTAATATGTTGATGTTCGGAACT 56695 Query 29230 CCGAGTAAGTTGCT 29243 ||| ||| ||||| Sbjct 56694 CCGGCTAACTTGCT 56681 Score = 86.0 bits (94), Expect = 3e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 25428 CTGGAAGACAGAATATCTGCATTGACTACCAAAGACCCCCAGAAGCTGAAGGTGTATACC 25487 || |||||||||||||| || || || || |||||||| | || || ||||||||||| Sbjct 61837 CTTGAAGACAGAATATCCGCTTTAACCACTAAAGACCCTAATAAACTTAAGGTGTATACA 61778 Query 25488 GATGGCTATGATGGTCATAGTCTTCGTGCGTATGCTTACTTTGGTGAGCAGATGCCAGAC 25547 ||||| |||||||| || || | ||||| | |||||| || | |||||||| Sbjct 61777 GATGGTTATGATGGACACTGTTTGCGTGCTTTCTATTACTTCAAAGACCGTATGCCAGAT 61718 Query 25548 ATAGTAGACACAGTTGA 25564 || || || || || || Sbjct 61717 ATTGTTGAAACTGTAGA 61701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 233204731239454