Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1348 426 2e-114 seq869 340 2e-88 seq1394 95.1 1e-14 seq583 93.3 5e-14 >seq1348 Length=1847788 Score = 426 bits (472), Expect = 2e-114 Identities = 1458/2272 (64%), Gaps = 57/2272 (3%) Strand=Plus/Plus Query 46972 CTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATAC 47031 |||| || || ||||| | ||| | ||| |||| |||||||| ||||||||||| | Sbjct 1698157 CTTTATCTACGGTAAATTGAATAGCATTGGCGGCTGGTTTTGTTCTCAAATAATACATGC 1698216 Query 47032 CAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAG 47091 | |||||||| ||| | |||| |||||||||| || || ||||| ||| | | Sbjct 1698217 CGGTCTTTAAGCCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTG 1698276 Query 47092 GTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTG 47151 | || | | ||| ||||| | |||||||| ||||| || || || || | || || | Sbjct 1698277 GCTCGGCCACATGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGGTCGGCAG 1698336 Query 47152 CCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGT 47211 |||| | || | | | | |||||||| |||||||| || | | || | Sbjct 1698337 CCATTTGTATGGTGGTCTTAACGGAAATCTCCCAAACTGTTTTGTATAGATCACGTATAT 1698396 Query 47212 CTTCTGGGAGAT-TAGTATT--TTGAATAGATCCTCCgttttctataattttgtttttta 47268 || || | | | ||| ||| || || || | || |||||||| ||||| | Sbjct 1698397 GTTTGGGTATTTCTTCTATGGCTTGTATGGAGCCGCGATTGGAAATAATTTTATTTTTCA 1698456 Query 47269 attcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTT 47328 ||||| ||| | | |||| ||||| ||| | | |||| |||| |||| | Sbjct 1698457 TTTCATCATCCCATAAATCAAGTTCGGTTAAATCTTTAAGCAAATGATGATTGACAACAT 1698516 Query 47329 GAAATTCTCCAGATAGTACTCTACGGCTA---TATATATTACTTGTATATGGTTCTATAG 47385 |||||||| || | || ||| ||| || |||||| || || ||||| | | Sbjct 1698517 TGAATTCTCCCGACAAAAC---ACGTCTAGTGTAAATATTAGAGGTGTACGGTTCAAAGG 1698573 Query 47386 ATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGC 47445 ||||||| || || | |||||| || || || ||||| ||||| | || | || || Sbjct 1698574 ATTCATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCATTGGGGCTAATAGCAAAG 1698633 Query 47446 TATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTG 47505 ||| | ||| |||| || || | | ||| | ||| | |||| Sbjct 1698634 AATTGCGTACACCATGTTGACTGATTTTCTCCTTCAACTCTGACCAGTTCCACAAGTCTG 1698693 Query 47506 ATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTAT 47565 || |||||| | ||||||||| || || || ||||||| ||| | || || Sbjct 1698694 TGGGTGTTTTATTCCACATATCATATTGTAGTATACCCTTACTTACTGGACAGCCGGGAT 1698753 Query 47566 ATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAAT 47625 | |||| ||| | || | | || || | ||||||||| |||||||| || | ||||| Sbjct 1698754 AAGTTTCATATGTGCCATCTTTTTCGGCCAATTCACAACTAGCTTCCAAAGCGCCATAAT 1698813 Query 47626 ATATTGTTTC--AAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATA 47683 | || ||||| |||| | || || || | | | ||| | | | || | || || Sbjct 1698814 AAATAGTTTCGAAAATCTGTTGAT-TTAACAAAAATGCCTTTTCACTCT-CATAGGGGTA 1698871 Query 47684 NNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGT 47743 || ||||| || || || |||||||| |||||||| || | |||| Sbjct 1698872 ACGCATTAAAATCAAAGTATCGGCAAAACCCTGAACACCTATACCAATAGGACGATGACG 1698931 Query 47744 TTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAG 47803 ||| || |||||| || || ||||| ||| || || || ||||| || || Sbjct 1698932 CAAATTGGACTTTCTAGCTTCGGGCAACGGATAAAAGTTGATGTCGATGATTTTGTTGAG 1698991 Query 47804 ANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTTA- 47862 | || | | | ||||| || |||||||| | || | | Sbjct 1698992 ATTCTTGGTAATAACTTTTGTAACATTTTTCAATTTTTTGAAATCAAAGGTCTTTTCTGG 1699051 Query 47863 --TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATT 47920 | |||||| ||||||| || || || || | |||||| ||||||| ||||| || Sbjct 1699052 CGTGACAAACATATTAAGGGCAATGGAGGCCAAATTACAAACAGCTATCTCATCAGGGGC 1699111 Query 47921 AGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATG 47980 || ||||| || || || | |||| || | || || || || || | ||||| || Sbjct 1699112 AGAATATTCTACAATCTCTGTGCATAAGTTGCTGCACTTAATGGTGCCAATGTTTTGCTG 1699171 Query 47981 ATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTG 48040 || | ||| || || || ||||| | |||| | ||||| || ||||| | || Sbjct 1699172 GTTGCTTTTGCGGTTGCAAGCATCTTTGTACAACATATAGGGTGTACCGGTTTCAACTTG 1699231 Query 48041 AGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTA---GCTTTATT 48097 || |||||| |||| ||||| || | ||| || | | | | | ||||| Sbjct 1699232 AGCTTCAATTATAGCAAACCAAAGAGCCTGAGCTTTGA---CGGTGCGATTGGCTTTTCC 1699288 Query 48098 ATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCC 48157 || | ||| || || ||||| || | || || || || || | |||| | | || Sbjct 1699289 TTCTTTTTCATACTTGGTATACAATTCTTCGAACTCCTCACCCCAAACATCCTGCAGACC 1699348 Query 48158 AGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAA 48217 ||||||| | |||||||| | ||||| || ||| | || || | ||||||| Sbjct 1699349 GGGACATTTGTGTGGACACATTAGGGACCAGTCACCATTTTCTTCCACACGTTTCATAAA 1699408 Query 48218 TATATCTGGTATCCAAAGAGCTATAAATAA-ATCCCTAGTTCTTAGTTCTTCATTGCCAC 48276 | || |||||||| ||||| ||| | || ||| || | ||| | ||||| ||||| Sbjct 1699409 CAAGTCGGGTATCCACAGAGC-ATAGAAAAGATCTCTGGCTCTATGCTCTTCCTTGCCGG 1699467 Query 48277 TATTCCT-TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 |||| | ||||| | ||| ||| || | ||||| | |||||| || || ||||| || Sbjct 1699468 TATTTTTCTTTAAATCCAA-AAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATA 1699526 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | |||| || ||||| ||| || ||||| | ||| | ||| ||||||| | Sbjct 1699527 GCAAAGGCACCAGGGCGTTTGCCACCACCCTGATCAACATAGCGGGCTACATTGTTAAAC 1699586 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 || || | |||||| || | ||||||||| | || || || || ||| || | || Sbjct 1699587 ACCCTGAGCATTGGTACCAGACCATTTGAGGTGCCGTTTGTGCCGTCAATGGAAGTGCCC 1699646 Query 48456 CTAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAG 48513 | || ||||| | | || | | || |||||||| ||| ||| ||||| | | Sbjct 1699647 TTGGCCCTTATGCAGTGTACGTTTA--TGCCAATACCACCCGCCGATTTGGATATCATGG 1699704 Query 48514 CACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAA 48573 |||| ||| | | | |||| || || ||| ||| | | ||| | |||| | Sbjct 1699705 CACATTGTTCCACTGACTTGAAAATACCCTCAATAGAATCGGCCACCATGGTCAATAAGA 1699764 Query 48574 AACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAA 48633 |||| |||| ||||| | || | | || ||||| || || ||||| Sbjct 1699765 AACACGACGACAACTGCGGTCTATTGGTAGCAGCCGCGAACAATGTAGGCGACGCATGGG 1699824 Query 48634 TAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGAT 48693 |||| | ||| || ||||| ||||| ||||||||| | ||||| ||||| | || Sbjct 1699825 TAAAATAACGCTCAGACAACAAATTATAAGTTTCAATAGCCGAATCAATATCGTCTCCAT 1699884 Query 48694 GTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTA 48753 |||||||||||| ||| | ||||||||||| || ||||| |||||||| || ||| | Sbjct 1699885 GTATACCTATAGCTACTCTCATTAACATATGCTGTGGTCTCTCAACAATCTTACCATTCA 1699944 Query 48754 TTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGT 48813 |||| | | ||| ||| | |||| |||||| || || || |||||||| |||||| Sbjct 1699945 TTTTTAGCAAATAAGATCTCTCCAGTGTTTTGAAGCCGAAGTAGTTGTAGCCAAAGTCAC 1700004 Query 48814 TATCATTAATAATTGATGAATTTATTCTTTCCTTATGTTTATATACTACATCCATTACAT 48873 ||||| ||||||||| ||||| | | ||| || ||| | ||||||| | Sbjct 1700005 GATCATAAATAATTGACGAATTCAAACGTTCTGCATTTTTCTGCACTACATTGTAATGGT 1700064 Query 48874 TTTTTGATAT-AAT--TGAT--TC---------CTT-------------GTAAAGATCTT 48906 || || || ||| ||| || ||| || ||||| Sbjct 1700065 ATTCGGAAATCAATGGCGATGGTCGCCCCGTCTCTTTATTAACAAAATGATACAGATCAC 1700124 Query 48907 CTACAACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAG 48966 || ||| || |||| |||||| |||||||| || | ||| || | || || | || Sbjct 1700125 TTATAACCTCTGAGAATACTTTTTTCGTTTCTTTGTGCAAATTGGAGACAGCAATGCGAG 1700184 Query 48967 CAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTA 49026 | || ||||| ||||||||| |||| |||| || ||||| | | ||||| || | Sbjct 1700185 CTGCCAATATGGCATAATCTCCATGATTTGTAGTTAATGTAGCTGCGGTCTCTGCCGCCA 1700244 Query 49027 ATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACTTTCATTGCTA 49086 | | || | ||||| ||||| ||||| || | || | ||| || |||| || | Sbjct 1700245 AATTGTCCAGTTCTTGTGTAGTAACACCACAGTAAAGGCCATTAATTACCTTCAGTGTAA 1700304 Query 49087 TATTTACTGGATCTATATGATCCATATCCAGTCCATAACATAAtttttttATTCTAGATG 49146 | |||||||| | | |||||| | || |||||||||| |||| ||| | |||| Sbjct 1700305 TGGCCACTGGATCAACAAAATCCATGTTCAAGCCATAACATAGCTTTTGTATGCGTGATG 1700364 Query 49147 TAATTTTATCAAACATTATATTCTCTTTACGACCGTCACGTTTTATAACAAA 49198 | |||||||| || || | || || || || || ||||| | |||||| Sbjct 1700365 TTATTTTATCGAAATGTACCTCTTCCTTGCGTCCATCTCGTTTAAGAACAAA 1700416 >seq869 Length=1271022 Score = 340 bits (376), Expect = 2e-88 Identities = 501/704 (71%), Gaps = 4/704 (1%) Strand=Plus/Minus Query 18795 ATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAAC 18854 ||| || ||||||| |||||| ||| | | ||||||||| ||||| || || || Sbjct 484139 ATCGGCCACAAATTCTATATATTCCGACATTAATTTACAATTCATGCCTATCAAATTGAC 484080 Query 18855 AGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATAC 18914 || | ||||||||||| ||||| ||||| || || || || || | ||||| | Sbjct 484079 GGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCGCTTCAGTGATAATTTCAAT 484020 Query 18915 AACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAA-ACATGCAAAATCAC 18973 || ||| ||| | | ||| | | || | |||||||||||| || ||| |||||||||| Sbjct 484019 AATTCTCTCTCGACTGGGACGTTGTACCAAATGTTTAAACATTAATACA-GCAAAATCAC 483961 Query 18974 AATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTC 19033 |||||| ||||| || | |||||| ||||| || ||||| | ||||||||| || | Sbjct 483960 AATGTAAACCCTCATCACGTGATATCAACTCATTGGAGAATGTAAGACCAGGCATAAGAC 483901 Query 19034 CTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTG 19093 | | ||| |||| ||| || || |||||||| ||| |||||| ||||| ||||| | Sbjct 483900 CACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTAAAGAAAATACCCTCTACAG 483841 Query 19094 CTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG-AATCCATTTCAGT 19152 | |||||||||| | | ||| ||| || | || | ||| | | |||||| || | Sbjct 483840 CAGCAAAAGCAATAATACGTTCACCAAAATTTGC-TGATTTCGAAGAAATCCAAGCCATT 483782 Query 19153 GCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATA 19212 |||||||| ||||| || ||| |||||| || || |||| |||||| ||||| | Sbjct 483781 GCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAAGAGATAATCA 483722 Query 19213 CGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATA 19272 |||| || ||| |||| ||| ||| || | | ||| |||||||| || || | | Sbjct 483721 CGCTGTTCACGATCCTTAATATAACTATCAATTAGAATACTATACATTTCAGAGTGTACA 483662 Query 19273 TTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTA 19332 ||||| || || || ||||| || || ||||| | ||| ||||| | |||||||| | Sbjct 483661 TTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCTCTGTAACTTGTACTTCTTGA 483602 Query 19333 CAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAAT 19392 | || | |||||| | ||||||||| || || ||||| ||| || || || || | Sbjct 483601 GAGAAACGTTCGACAAGATTTTCATTGACAATGCCATCGGAAGCGGCGAAGAAAGCAAGA 483542 Query 19393 ACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTA 19452 |||||| ||| ||||| |||| ||| | | | | ||| || |||||||| Sbjct 483541 ACATGTGAAATGAAATGACGCTCATTGTCGGTGAGTCTTTCCCAGTCGGAGTTATCTTTA 483482 Query 19453 GATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTT 19496 || | |||||||||||| || |||||||||||||| || || || Sbjct 483481 GAAAGATCTACTTCTTCTACCGTCCAAAAAGAAGCTTCGGCCTT 483438 >seq1394 Length=309634 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 17239 TATCTGTAAAATAATTACCTGTCCAATTTGATGTGCCAATATACGCAGTTTTATCAGTTA 17298 |||| |||||||||| ||| | |||||| ||||| ||||||||||| || |||||||||| Sbjct 287254 TATCGGTAAAATAATCACCCGACCAATTGGATGTACCAATATACGCTGTATTATCAGTTA 287313 Query 17299 CCATGTATTTTGCATGATTTACTCTTGAATAAGGAAT 17335 |||| ||||| |||||| || | ||||||||| Sbjct 287314 CCATATATTTATTATGATTGACACGGCCATAAGGAAT 287350 >seq583 Length=2816 Score = 93.3 bits (102), Expect = 5e-14 Identities = 280/427 (66%), Gaps = 4/427 (1%) Strand=Plus/Minus Query 18691 TTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAAATGGATTT 18750 || |||||||| ||||| || || | || || ||| ||||| ||||| || ||||| Sbjct 595 TTCTCAAAGAAGTTAGTCTTACCAGCCAAAGAGATATTCTCCATGAAATCGAAGGGATTG 536 Query 18751 TTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTA 18810 || || || || || | || || | | | || | || ||||| | | | Sbjct 535 GCAACCTTGTAAATCTTCTCATGGCCCAAGGCAACCATTAAACGGTCAGCTACGTACTCA 476 Query 18811 ATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCT-GT 18869 | || ||||||| |||| |||||| || | || | |||||| | ||||| | Sbjct 475 ACGTACTGATTCATCAAATCAGCATTCATACCAAGCAAGTGAACAGGCAAAGCATCACGG 416 Query 18870 AAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTATCTTCATT 18929 ||| | | ||||||| |||| || ||||| | |||||| ||| | || | | Sbjct 415 AAGTACT-CTTGTTCAATATCAACAGCCTCGGTCATAATACGCTCAATAATCTCACGACT 357 Query 18930 AGGAGGGTA-TAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGT 18988 ||| ||| | ||| || || | | ||| || |||||| || | ||||| | Sbjct 356 GGGACGGTTCTCTAAG-TGAGAGAAGAGAAGACAAGCGAAATCAGTGTGCATACCCTCAT 298 Query 18989 CTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACC 19048 |||| || | |||||| ||||||||||||||||||| || | || || |||| Sbjct 297 CTCTGGAAATAAGCTCATTACTGAATGTTAAACCAGGCATCAAGCCACGCTTCTTCAACC 238 Query 19049 AGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTA 19108 |||| || | ||| ||||| ||| ||||| | ||| || || || || ||||| |||| Sbjct 237 AGAAAATGGCAGCGAATGAACCACTGAAGAAGACACCCTCGACAGCAGCGAAAGCGACTA 178 Query 19109 GTCTTTC 19115 ||| || Sbjct 177 ATCTCTC 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562096763845320