Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq869 277 2e-69 seq1394 107 2e-18 >seq869 Length=1271022 Score = 277 bits (306), Expect = 2e-69 Identities = 491/709 (69%), Gaps = 8/709 (1%) Strand=Plus/Minus Query 36993 AATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTT 37052 |||||| ||| | | ||| || ||||||||||| |||| |||||| || | | || Sbjct 484156 AATTCCACCAGCAAACGATCGGCCACAAATTCTATATATTCCGACATTAATTTACAATTC 484097 Query 37053 ATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCA 37112 || || || | || || || | |||||| ||| ||| | ||| ||| | || || Sbjct 484096 ATGCCTATCAAATTGACGGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCGCT 484037 Query 37113 TCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAAT 37172 || | | || | || ||| ||| | | || | | | |||| |||||||| | Sbjct 484036 TCAGTGATAATTTCAATAATTCTCTCTCGACTGGGACGTTGTACCAAATGTTTAAACATT 483977 Query 37173 AA-ACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGT 37231 || ||| |||||||||||||||||||| ||||| | |||||| ||||| || || || Sbjct 483976 AATACA-GCAAAATCACAATGTAAACCCTCATCACGTGATATCAACTCATTGGAGAATGT 483918 Query 37232 TAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAA 37291 | || ||||| | ||| | ||| || | |||||| || | |||||| ||| ||| Sbjct 483917 AAGACCAGGCATAAGACCACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTAAA 483858 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATC 37351 ||||||||| || || || ||||| || | || |||| ||| ||| ||| || || Sbjct 483857 GAAAATACCCTCTACAGCAGCAAAAGCAATAATACGTTCACCAAAATTTG--CTGATTTC 483800 Query 37352 --AGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATT 37409 ||||||||| ||| |||||| ||||| |||||| | || |||||||| Sbjct 483799 GAAGAAATCCAAGCCATTGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATA 483740 Query 37410 GCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTA 37469 || || |||||| | | | ||||| ||| | |||||| |||||||||| | |||| Sbjct 483739 GCATTAAAGAGATAATCACGCTGTTCACGATCCTTAATATAACTATCAATTAGAATACTA 483680 Query 37470 TACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCA 37529 |||||||||||||| | |||||| || || || ||||| ||||| ||||| | || || Sbjct 483679 TACATTTCAGAGTGTACATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCTCT 483620 Query 37530 GATAATTGAACATCGTTAAAAAACCTCTTAGCTAAG-TTTTCATTAACTATCCCATCACT 37588 | | ||| || || | | | || | || | ||| |||||||| || || ||||| Sbjct 483619 GTAACTTGTACTTCTTGAGAGAAAC-GTTCGACAAGATTTTCATTGACAATGCCATCGGA 483561 Query 37589 AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTT 37648 ||| || |||||||||||||||| | || ||||| | |||| | | | | ||| Sbjct 483560 AGCGGCGAAGAAAGCAAGAACATGTGAAATGAAATGACGCTCATTGTCGGTGAGTCTTTC 483501 Query 37649 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAA 37697 ||| || ||||||| || | ||| ||||| || || ||||||||| Sbjct 483500 CCAGTCGGAGTTATCTTTAGAAAGATCTACTTCTTCTACCGTCCAAAAA 483452 >seq1394 Length=309634 Score = 107 bits (118), Expect = 2e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 153288 GGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCT 153347 |||||||||||||||||||| ||||| ||| || |||||| | ||| | || ||||| Sbjct 287986 GGTGTTTTACATACAAAATTCTGGATTTCTGACAAAAAACATATTTATTTGGGCAGTGCC 287927 Query 153348 AATATGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTAT 153391 |||||||| |||||||| |||| || || |||||||||||||| Sbjct 287926 AATATGGACTGGAGATCTTTAACGCAGGTTAAAGAATTAGGTAT 287883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592304117016520