Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq165 210 7e-50 >seq165 Length=448888 Score = 210 bits (232), Expect = 7e-50 Identities = 245/330 (74%), Gaps = 3/330 (1%) Strand=Plus/Plus Query 25944 GCCGATCATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTC--- 26000 ||| | ||| ||||| | ||||||| || || || | ||| |||||||| || || Sbjct 55451 GCCTAACATTTGCATTGAACCGCCAATATTAACAACCACTTCTGTGGTGTAACGATCTTG 55510 Query 26001 AACGCCGTCCTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACC 26060 | | | | | || |||||| || |||| || || ||||||||||| ||||| || Sbjct 55511 ACCACTTTGATCTTGCCACTTACGTGTTTGCAAAGAACCTTCAATGTAAACTTGTGAGCC 55570 Query 26061 TTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCA 26120 ||| ||||| || |||||||| | || |||| || || || | ||| || || ||||| Sbjct 55571 TTTTTTCAGATATTCGCCCGCAACTTCAGCTAATTTTCCGAAAATCACTACACGGTGCCA 55630 Query 26121 TTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTAC 26180 ||| || ||| | |||| ||||| ||||||||| ||||||||| || || || | Sbjct 55631 TTCGGTTTTTTCACGCATTTCACCGGTTTGCTTATCGCGCCAGCTTTCAGAAGTTGCCAG 55690 Query 26181 GGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAG 26240 || | ||| || || || ||||| ||||||||||||||||| || ||||| | ||||| Sbjct 55691 AGTTAGGTTTGCCACAGCACCGCCGTTAGGCATGTAACGGATTTCAGGATCTTGCCCCAA 55750 Query 26241 GTTACCGACAAGGATTACTTTATTTACGCC 26270 |||||||| ||| ||||||||||||||||| Sbjct 55751 GTTACCGATAAGAATTACTTTATTTACGCC 55780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159814349010358