Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq964 174 1e-38 seq1190 167 2e-36 seq1304 129 5e-25 >seq964 Length=291957 Score = 174 bits (192), Expect = 1e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||| || || || |||||||||||||||||||| || || ||||||| | ||| | | Sbjct 215857 AAACGCAATACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGG 215798 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 |||| ||||| || ||||| || || ||||||||||||||||| || ||||| |||||| Sbjct 215797 CCATCTTCCAACTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCT 215738 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 || ||||| ||||| ||| ||| |||||| ||| || || | ||| || || | || Sbjct 215737 TTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACCTCCAATGTA 215678 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 | ||||| || ||||| ||||| || || || |||||| Sbjct 215677 ATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCATG 215639 Score = 170 bits (188), Expect = 2e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 |||||||| || ||||| | |||||||||||||||||||| ||||| | | || | Sbjct 215629 AAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGACAATGTGCGC 215570 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 | || |||||||| || || ||||| |||||||| |||||||| || || || |||||| Sbjct 215569 CCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCT 215510 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 || ||||||||||| ||| ||| |||| | ||| ||||| | || ||||| | |||| Sbjct 215509 TTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCAACTTCCAAAGTG 215450 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 | |||||||| || || || || ||||| || |||||| Sbjct 215449 ATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCATG 215411 Score = 159 bits (176), Expect = 3e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||||| ||| || || || |||||||||||||| ||||| ||||||| | ||| | Sbjct 215401 AAACGTAGAACCAAGTGGAGAGTAGATTCTTTTTGAATATTATAATCGGACAAAGTGCGT 215342 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 | || |||||||| ||||| ||||| || | ||| |||||||| || ||||| || || Sbjct 215341 CCGTCTTCCAATTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCC 215282 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 |||||||||||||| || ||| |||| | || || || | ||| || ||||| ||| Sbjct 215281 TTATCTTGAATTTTAGCCTTAACATTTTCAATCGTATCCGAAGGTTCGACCTCAAGGGTG 215222 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || ||||| |||||||| || || || || ||||| Sbjct 215221 ATGGTCTTGCCAGTTAAAGTCTTCACGAAGATTTGCAT 215184 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||||| || ||||| ||||| || || ||||| || ||||| || | Sbjct 217109 CCTCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 217050 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| ||| ||||| || || |||||||| || ||||| || ||| Sbjct 217049 AAGGTACGACCATCTTCCAGTTGTTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGA 216990 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||| || ||||| ||||| | || | || || || | ||| ||| Sbjct 216989 ATACCTTCCTTATCCTGGATTTTAGCCTTTACGTTCTCAATGGTATCGGAAGGTTCGACT 216930 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| ||||||||||| || ||||| || || || ||||| Sbjct 216929 TCCAAAGTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATTTGCAT 216883 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 101336 AATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACA 101395 || |||||||| |||||||| || ||||| ||||| ||||| || || || || ||| Sbjct 216001 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCCTGGATCTTGGCCTTAACA 215942 Query 101396 ATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTT 101455 | || | |||||| || | ||| ||||| | || | |||||||||||||||||||| Sbjct 215941 TTCTCAATAGTGTCGGAAGGTTCAACTTCCAAGGTAATAGTTTTGCCGGTTAAAGTTTTA 215882 Query 101456 ACAAATATCTGCAT 101469 || || || ||||| Sbjct 215881 ACGAAAATTTGCAT 215868 >seq1190 Length=275307 Score = 167 bits (184), Expect = 2e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || || || || | || ||||||||||| ||||||||||| | || ||| | | || Sbjct 186887 CGCAATACCAAGTGCAAAGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTACGGCCA 186828 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||||||| || || || || |||||||| |||||||| || ||||| |||||||| Sbjct 186827 TCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTG 186768 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 || ||||| || ||| ||| |||| | |||||| |||| || || |||||||||| Sbjct 186767 TCCTGAATCTTGGCTTTGACATTTTCAATAGTGTCGGACGGCTCGACCTCAAGAGTGATG 186708 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || |||| ||||| ||||| |||||||| Sbjct 186707 GTCTTACCCGTTAGGGTTTTGACAAAAATCTGCAT 186673 >seq1304 Length=336898 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | || ||||| ||||| || ||||| |||| | || | |||| ||| Sbjct 274191 ACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCC 274250 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| ||||| || || |||||||| |||||||| || || || |||||||| ||||| Sbjct 274251 AATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGG 274310 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| || ||| |||| | ||||| || | || ||||| | || | || || Sbjct 274311 ATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCAACTTCCAAGGTAATGGTCTTA 274370 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||||||| || || |||||||| Sbjct 274371 CCAGTTAAAGTTTTGACGAAGATCTGCAT 274399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396270126821541