Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_018854.1 Length=69855 Score E Sequences producing significant alignments: (Bits) Value seq410 214 8e-51 >seq410 Length=72445 Score = 214 bits (236), Expect = 8e-51 Identities = 696/1062 (66%), Gaps = 33/1062 (3%) Strand=Plus/Minus Query 65330 CTCTTCCGGGAAGTACATCTTACCAGCTTTGAACCATGGAACTACCAGGTTAAAGCGTGA 65389 ||||| || ||| | ||||| |||| ||| |||| || ||| || | |||| Sbjct 22943 CTCTTTAGGAAAGAATATCTTTCCAGTAGCAAACAATGGCACAGCCATCTTCATACGTGT 22884 Query 65390 CAGCTTAGAGGTTACAGGACGTATACCCGGCT---TACCACCTTCAGAAGATGCAAAGTT 65446 ||| ||| || ||||| | || ||||| | ||| || |||| ||||||| Sbjct 22883 CAGTTTATCTGTCACAGGTCTAATGCCCGGTTCTTTACGACTACCAGAGCGTGCAAAGGA 22824 Query 65447 AAAGAAGACATTACGGTTAATCATTTCTT--TCTGAAGG-AGCGAA---ATGAATCCACC 65500 |||| | | |||| |||| |||| ||| | | | | || ||||| |||| Sbjct 22823 AAAGTATA------GGTTCCTCATCTCTTGTTCTCTACGTATCCAACTAATGAAACCACT 22770 Query 65501 TTGCTGCCCTGTGATTTCGACACCAACGTTTTGTGGTTGGTATTCTTGAACCAGACGGAA 65560 |||||| ||||| | ||| |||||||| ||||| | || ||||||||| | ||| Sbjct 22769 TTGCTGACCTGTTACTTCTACACCAACAGACTGTGGGTTATAAATTTGAACCAGTCTGAA 22710 Query 65561 CAGGTCATCAAAGTTTTTATCCATAAGCTGACGATTAGCCACACCATCAACCCAGAACCA 65620 | |||| || ||| ||||| || || | |||||| ||| || |||| Sbjct 22709 TAAATCATTAAGGTTAGCGTCCATCTCTTGTTTCTTGCAAATACCATCTACCAAGTACCA 22650 Query 65621 ATCTCCATTAGAACTATAAGCCCAAACTGATATGACACTATAGTCACTGGTCTGTTTCTC 65680 || || | | | ||| |||||||| |||||||| |||||| ||| ||| Sbjct 22649 ATTACCTTGATAGTCATACGCCCAAACAATAATGACACTGTAGTCAGCACTCTCTTTAGA 22590 Query 65681 CGATGTAGCAAAGTCAGTTGTAATATAATAGTTGTAG--CAGGACTTCATCCTTAATAGT 65738 || ||||||||| || ||||| ||||| | || | | | | | | | | | Sbjct 22589 AGAGACAGCAAAGTCTGTGGTAATGTAATAATGATAATTCTGTAACTGTGTCATGAGATT 22530 Query 65739 TGCT-GTCTGCTATACCATCTAATTTCACTA-TCCTGAACCAGTCTCTCATCTTCAGAGC 65796 || | | |||| | || | || | || |||| || |||||| || |||||| Sbjct 22529 TGTACGAGAGTAATAC--TGTA--TCCATGACTCTTGAATCATTCTCTCTTCATCAGAGG 22474 Query 65797 TAATACGGAGCATAAGTTCCTGATAGAAGCCTGCCAGCTTACCCGTCTTAACTGCCATGT 65856 |||||| | ||||||||| || | || | | || || | || |||| | Sbjct 22473 CAATACGTAACATAAGTTCTTGGTTAAATGATTTAATTCGCCCAGTTCTCACAGCCAACT 22414 Query 65857 CATATTGGGCTTTGATGTAGTCGTAGGAGAAACGGTCATCCCATGCACCTTGAAATTCTT 65916 |||| ||| || | | || || ||||| || ||| ||||||||| |||||| | Sbjct 22413 CATACTGGCTCTTAACAAATTCATACGAGAATCGCTCAGGCCATGCACCAACAAATTCAT 22354 Query 65917 CC-CTACTACAAGGGAACTTCTCACACACAGGCCATACGTTGACATCCCATGCACCAGAC 65975 || | ||||||||| |||||| | ||| | ||||| || | ||| | || ||| Sbjct 22353 GTTCTTC-ACAAGGGAAGCGCTCACAGATAGGGTAAACGTTAACGTACCAACCGCCTGAC 22295 Query 65976 TCTACTGCTTCAATGATAATATCTTCCTTATTAAAGGGAGTACCATTGAAGATTACTTTA 66035 || || || ||| | || ||| | ||||||||| || |||||||| |||| | || Sbjct 22294 TCAACGGCCTCATATAGAACATCATTCTTATTAAAAGGCGTACCATTAAAGACAATCTTT 22235 Query 66036 CGACGGGTAGGATCAAGAGCATGGTTCACACCTTTATAGACGGTATCCTTAATAGCTTCC 66095 || || ||||| ||||||| ||||| ||||| || || |||||||| |||||| Sbjct 22234 TTCTTTGTTGGGTCAAGGGCATGGTCAACACCGTTATACACAGTGTCCTTAATCGCTTCC 22175 Query 66096 ATACTCGTCTTGGAGTTAGCATCACCATCACTAATCAAGTCATCCAGTACGCATAATGTT 66155 || || || || |||||||| | ||||| | |||||||| ||||| | || Sbjct 22174 ATTTCTGTTTTAGACTTAGCATCCTCGTCACTCACTAAGTCATCAAGTACAGCCAGGGTA 22115 Query 66156 GGACGTTTACCATATATCTTCGTACCACGAAGACCTGTCTTAGCACCAAAC-AGCTTAAC 66214 ||||| |||||||| || || ||||||| | ||||||||||||||||||| | | ||| Sbjct 22114 GGACGCTTACCATACATTTTATTACCACGGATACCTGTCTTAGCACCAAACAAACCTAA- 22056 Query 66215 ACCTAGACGATGTCCTTCTACATT-ACGAAACTCTAACAGGTTATCCGTAAAGGTAGCTT 66273 || | ||| || || |||| ||| ||||| | | ||||||||||| | || Sbjct 22055 TCCAAACTTATGACCATCAGCATTCACG-AACTCAATACGCTTATCCGTAAACTTCGCCA 21997 Query 66274 CAGGTATCCATTGCTGAAGGAACTCACTATTCTTGTAACGAAACTCAATGTTCTTACGTG 66333 | || | ||| ||||||| || || | ||| | || | |||||| | | Sbjct 21996 CGGGCACGAATTTCTGAAGGGTCTGGCTTTGTAAGTATCTGTTTTCTAAGTTCTTTCTT- 21938 Query 66334 CAGAT--TTAGCACCGTTATCCATTGAGTCAGATACATAAAT 66373 || | || || ||||| ||||||||||||| ||||| || Sbjct 21937 -AGGTTCTTGGCTCCGTTGTCCATTGAGTCAGCGACATACAT 21897 Score = 190 bits (210), Expect = 9e-44 Identities = 664/1014 (65%), Gaps = 37/1014 (4%) Strand=Plus/Minus Query 54090 GCAACAGTCTTAATCAGAGCCAGACGTTCTGGACGTTTAACCAGGATACCATAGTACCAC 54149 ||||| || ||||||| |||| ||| || | || || | ||||| || ||||| Sbjct 35300 GCAACTGTTTTAATCATCGCCAAACGCTCAGAGCGAAGAATTAACATACCGTACCACCAC 35241 Query 54150 TTGATAGAACTGAAGCCAGTTTCGCCATACGGGTCATTACGGTCAGCAGTTTCTTTACCC 54209 ||||| |||| ||||||| ||||| ||||||| |||||||||||||| || || Sbjct 35240 AACATAGAGGTGAATCCAGTTTGACCATATGGGTCATGACGGTCAGCAGTTTGTTCCCCA 35181 Query 54210 GGCATCTTAGTCAT-GATGGTGAACTTA-ACAGACTTACCATCAGTCTGGAAGCCAATGG 54267 |||| ||||| || || | ||||||| || ||| || ||| | ||||||| | Sbjct 35180 GGCACTTTAGTAATTGACTG-GAACTTATACTGACGG-CCTGCAGCTTCAAAGCCAACAG 35123 Query 54268 TAGAGAAGGAGTCATCACCAACTACCAGCATCGGGAATACGTCGTAGTGTTCCTGACCAG 54327 ||| || || || ||||||| |||| ||| ||||| | || || | || | | | Sbjct 35122 TAGTAAATGAACCACCACCAACAACCATCATTGGGAAGATATCATATTTATCGTCAGT-G 35064 Query 54328 ATACCATAGAGGTACGGTAACCCGGGTTAGTAGTAACCTGAGCACCAGCACCTGCCCAAT 54387 ||| ||||| || ||| | || |||| ||| |||||| ||| || | | Sbjct 35063 TTACGATAGA--TA--GTATCT----TTGTTAGTTACCGCAGCACCTTTACCAGCAAAGT 35012 Query 54388 GCAGCATCTC-TGGAACCTGG--ATGATACGGAACTTATCAATACAACCAATTTCACCAT 54444 | || | | ||| | || | |||||| ||| | |||||| |||||||| Sbjct 35011 GTT---TCGCATTGAAGTTCACAATTACACGGAATGGGCCAACAGAACCAACTTCACCAT 34955 Query 54445 TCATCAGAGTACCAGCATCAGCATAGTGCTGAACTTCGATGAATGCTTTATTACCAAACA 54504 | | ||| || |||||||||| || || || || ||| ||||||||| Sbjct 34954 GTGCGATATGACCTGCCGCAGCATAGTGTTGTACAGGAATAAACGCTGGATTACCAAAGT 34895 Query 54505 GGTCTTTCATCGCTTTCAGTTCTGGA-ACCAGTTCAGAACCAACGTACATTACACGAGTA 54563 |||||||| | | | | | | | |||||| ||| | ||||| ||||| | Sbjct 34894 TATCTTTCAT-GTTACGAATAGTAGTCAGCAGTTCGTTACCGATATACATATAACGAGCA 34836 Query 54564 CCACCGAGTACTTTG-GTATCTGTCAGTTTAGAACCAGTGATGATAGTAGTCTGGGTCGG 54622 || || || ||| ||||| || | | |||||| |||| | ||| | || Sbjct 34835 G-ACGGAATAGTTTTCGTATCAGTGAATGGAGAACCTTTGATAACGTCAGTGTTACGTGG 34777 Query 54623 GGTACGGTTCTCAGTAAGAATCTGGTCAAGACGCATCAGGTTCTTATAAGAAACTACAGA 54682 |||||||| || ||||||| | || | ||| ||| |||| ||||| |||| |||| Sbjct 34776 TGTACGGTTTTCGTTAAGAATATCATCTAAACGTTGCAGATTCTCATAAGTAACTTCAGA 34717 Query 54683 CGGGGTA--GAACCTTCACCAGTAATGGTAGCATCAGAGACGGCAGCACCTGCATACAGT 54740 | || | |||||||||||| || | |||| | || |||| ||| ||| Sbjct 34716 --GATTACCGCACCTTCACCAGTGATTTCATCATCTTTCAATGCCACACCAGCAAACATG 34659 Query 54741 ACAGTACCAGCAGCAGCCAGCAGGTCTTTCTGGAGAACAGCTTCAGTCAACTGTACAGCA 54800 | |||||||||| | | || || | | ||| | ||||||| | ||||| ||| Sbjct 34658 ATAGTACCAGCACCTTGTAACAACTCAATTTCGAGCATGTCTTCAGTGATTTGTACCGCA 34599 Query 54801 CCGTTCATCAGTTCACGAGACAGGTGTTCTTTCAG--TTGGTCATCAGAATCAAAGTCCA 54858 || | | ||||||||| || |||| |||| | || |||| ||||||||| | Sbjct 34598 CCTGTTACCAGTTCACGCTGCATATGTTTCATCAGCATCGGG--TCAGTATCAAAGTCGA 34541 Query 54859 GGGACTCTTGAGTAAATTCGTAGAAGAAGCCGAATTTATGAATAGAGCCTTCACGAGCCA 54918 || |||| ||| | || ||||| || | |||| ||| || |||| ||| Sbjct 34540 TAGAGTCTTTAGTCCACTCACGGAAGATACCCATTTTAGAAATGGAACCTTTGATTTCCA 34481 Query 54919 GACG---AGTAAAGCCTACACGGTTAACACGACCACCATTCTCTGACAGCAGAGGCAGTT 54975 |||| |||| || |||||||||||||||||||| | || || |||| || Sbjct 34480 GACGGACAGTA---CCAACACGGTTAACACGACCACCTTCTTCACCCATGTACGGCATTT 34424 Query 54976 TAGAAGTGATGTTACCAACGTCTTTGGAAGAGCCATAAAGGTTACCGTTAACGATGGTAG 55035 || | ||| |||||||||||||| ||||| || || | |||||| | ||| || Sbjct 34423 TATCAAGGATTTTACCAACGTCTTTAGAAGAACCGTATAAGTTACCATCTTTGATTTTAA 34364 Query 55036 CACCATTAGCATCAATACCCTGGTCGTTAATGTTCTTATCGTCGAGCAAAGGAA 55089 | ||| |||||| ||||| |||||||| | ||| || || ||||| |||| Sbjct 34363 CGCCAGAAGCATCGATACCTTGGTCGTTCACGTTACGGTCATCCAGCAATGGAA 34310 Score = 118 bits (130), Expect = 5e-22 Identities = 258/385 (67%), Gaps = 5/385 (1%) Strand=Plus/Minus Query 25028 GTGGATAAGATTATCACTTCATTCATCCCGGCTTTCCGTAATGCACAACCGGGACCAGAT 25087 || ||||| || | || || || ||||| || |||| | | |||| || | ||| Sbjct 62074 GTTGATAAAATATTAACCTCGTTTATCCCTGCGTTCCTTGAAGCACCACAAGCTGAGGAT 62015 Query 25088 GGATGGCACTACCTATTCGGCAACCTCAATCTGGGGGGAACGGTTTCTGGTAGATTATCT 25147 |||||||| ||| | ||||| | |||| | || ||||| ||||||||||| | Sbjct 62014 GGATGGCATTACTTGTTCGGATATTTCAACTTAGGTGGAACCAAGTCTGGTAGATTGAGT 61955 Query 25148 GCCTCTGAGCCAAACCTGCAAACTATTCCGTCTGGCTCCAAATACGCCAAGAAGATTAAG 25207 | ||| | || ||| | |||| || || || || | | | || || | | ||| Sbjct 61954 TCATCTAACCCGAACTTACAAAACATCCCATCAAGC-CGTAGTCCGTACAGTAAAGTAAT 61896 Query 25208 AAA----TGCTTCGAAGCACCCCCAGGTTGGATCTTTTGTGGACTGGACTTTGCAAGCCT 25263 || ||||| |||||| ||| ||| | ||| |||||| ||||||| || || Sbjct 61895 CAAACGTTGCTTTAGAGCACCGAAAGGCTGGCTGTTTACTGGACTAGACTTTGATAGTCT 61836 Query 25264 TGAGGACCGTATCTCAGCTTTAACTACTAAAGACCCTAATAAATTGCGTGTGTATACTGA 25323 ||| ||| | || || |||||||| |||||||||||||||||| | |||||||| || Sbjct 61835 TGAAGACAGAATATCCGCTTTAACCACTAAAGACCCTAATAAACTTAAGGTGTATACAGA 61776 Query 25324 CGGGTTCGATGGGCACTCCCTCAGAGCTAAATTTTATTTCGGCGAGCAAATGCCGGATAT 25383 || | ||||| |||| | | ||| | ||| ||| || | ||||| ||||| Sbjct 61775 TGGTTATGATGGACACTGTTTGCGTGCTTTCTATTACTTCAAAGACCGTATGCCAGATAT 61716 Query 25384 AGATGATTCTGTGGAAAGCATCAAC 25408 | ||| |||| || || || ||| Sbjct 61715 TGTTGAAACTGTAGATAGTATTAAC 61691 Score = 93.3 bits (102), Expect = 2e-14 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 57308 TTCTTCCATAGGGTCTGGTTGTGGTCGCCAGGTACGTAATTCATGAGCAAGGTCTGGCA- 57366 ||||| ||| ||||| || |||||| | ||||||||| || ||||||||||| |||| Sbjct 32136 TTCTTGCATTGGGTCAGGCTGTGGTTGGTAGGTACGTAGTTTGTGAGCAAGGTCAGGCAT 32077 Query 57367 --TACGCTTAAGTTCTGCAATTTTAGCTACGAGAGATAA-TGTAATAGTCTGGTCAACTG 57423 ||||| | ||||||||| | || | || | ||| | |||||||||||| || | Sbjct 32076 TTTACGC---AATTCTGCAATATCTGCCA-GAATGTTAAGGGCAATAGTCTGGTCTACGG 32021 Query 57424 TATTACCTAACGTTTGAACCATGAAGCTCAAGTCCTGAGATTTCTGGTTATCAATTTCAG 57483 ||||||| | || || | |||||| || || || | |||| |||||| ||| | Sbjct 32020 TATTACCCATAGTCTGTAACATGAATGCCAGTTCTTGTGCTTTCATGTTATCTTCTTCTG 31961 Query 57484 CAGTATTAATATCAA 57498 | || | ||||||| Sbjct 31960 CCGTGGTGATATCAA 31946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 223406535802488