Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq253 156 5e-33 seq87 100 3e-16 >seq253 Length=360942 Score = 156 bits (172), Expect = 5e-33 Identities = 696/1067 (65%), Gaps = 69/1067 (6%) Strand=Plus/Minus Query 153200 GCCCGTGCATACATCGAATATCGCCACGATCGCGATATTGCCCGTGAACAGAAAAGTA-- 153257 || |||||||| |||||||| ||||| || || |||| || || ||| ||| ||| Sbjct 105874 GCTCGTGCATATATCGAATACCGCCATGACCGAGATAATGAACGCGAA---AAACGTAGC 105818 Query 153258 -AGCTGTTCAAAGATATCTCCGGTATGGTGAATCTGTCCAA--CAAAGAG--ATCAC-CA 153311 | ||| | | ||||| |||| || | || ||| ||| | || || || Sbjct 105817 CAACTGACCCATGATATTCGCGGTCTGAT-----TGAACAAAGCAATGTTTCATTACTCA 105763 Query 153312 ACGAGAACGCGAACAAAGAC-GCAAGGGTATTCCCTACACAGCGCGATCTGCTGGCTGGT 153370 | || || || ||||||||| |||| | || |||||| || || ||| |||| || || Sbjct 105762 ATGAAAATGCAAACAAAGACAGCAAAGTGAT-CCCTACCCAACGTGATTTGCTCGCAGGC 105704 Query 153371 ATCGTAGCGAAACACTTCGCACGTAACCACATTCTGCCAAAACACATTGTAGAAGCGCAT 153430 || || || || || | ||| | || ||| ||||| | | || || || Sbjct 105703 ATTGTCGCAAAGCATTACGCTAAACAACATATTTTGCCACGTGATGTGGTTATTGCTCAC 105644 Query 153431 GATTCTGGTGATATCCATTATCATGATCTGGATTACA-GCCCGTTCACGCCATACACAAA 153489 || ||||| || |||||||| ||||| ||||| ||| || | |||| || Sbjct 105643 GAACGCGGTGAAATTCATTATCACGATCTCGATTATGCGCCATTTTTCCCCATGTTTAA- 105585 Query 153490 CTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAGA 153549 ||| ||| | ||| | |||| ||| | ||||||| || || |||||||| || || Sbjct 105584 CTGTATGCTGATTGATCTTGAAGGCATGTTAACTAATGGGTTTAAAATGGGTAATGCCGA 105525 Query 153550 CATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCACA 153609 || || || || |||||||| ||| || || | | || || || | ||| || Sbjct 105524 AATAGAGCCTCCTAAATCAATTTCCACTGCCACCGCAGTGACAGCCCAAATTATCGCTCA 105465 Query 153610 GATTGCCTCTCACCAGTACGGCGGGACAACCTTTGCTAACG--TTGATAAAGTGCTGGCT 153667 | || || || || || || ||| | | | || ||||| || | || ||| Sbjct 105464 AGTAGCTAGCCATATTTATGGTGGCACCACCAT--CAACCGCATTGATGAAATCCTTGCT 105407 Query 153668 CCATATGTTCAAATGACATATGATAAGCACTTTAAAGATGCCAAAAAGTATCAAATCCCT 153727 || ||||| || || | ||||| || || | |||| || | ||||| | Sbjct 105406 CCTTATGTCCACATCAGCTATGAAAAACA-TCTAAA------AACAGCGATCAATTGGGG 105354 Query 153728 CGT----GATGTTCAG---TATGCA-ATAGATAAAACTGAAAAGGATGTTTTCGACGCGT 153779 | | |||| | ||||| |||| ||| | ||||| ||||| ||| || | Sbjct 105353 CATTGAAGATGCGAAAGGCTATGCTGATAGCCAAACCGAAAAAGAATGTTA-CGATGCCT 105295 Query 153780 TTCAGTCATATGAATACGAAGTAAACACCCTGCATACTGCGAACGGTCAAACCCCGTTTG 153839 | || || |||||||||||| ||||| |||||||| || || ||||||||||| || | Sbjct 105294 TCCAATCCCTTGAATACGAAGTGAACACACTGCATACCGCCAATGGTCAAACCCCCTTCG 105235 Query 153840 TTACAATTACGTTCGGTACTGGTCAATCCCGATGTGAACGCATGATCCAGAAAGCGATTC 153899 | || || ||| ||| || ||| | | | |||| ||||||| || | |||| Sbjct 105234 TAACCTTTGGGTTTGGTTTAGGCACATCGCAAGAAGCACGCTTGATCCAACAATCCATTC 105175 Query 153900 TGAAAAACCGTATTCGC-GGCCTGGGTAAAGAGGGTATCACTCCGGTATTCCCGAAACTG 153958 | |||||||||| |||| || | |||||| | ||| ||| | || ||||| ||| | Sbjct 105174 TAAAAAACCGTA-TCGCTGGGTTAGGTAAAAATCGTAAAACTGCCGTTTTCCCTAAATTA 105116 Query 153959 GT-TATGTTCATGGAAAAAGG----AATCAACCTTGATCCAGAGGATCGCAACTATGACA 154013 || | || | || ||||||| |||| ||| || | |||| |||||||| | Sbjct 105115 GTGTTTGCT-ATTAAAAAAGGCCTTAATC-ACCAATAT---GGTGATCCTAACTATGATA 105061 Query 154014 TCAAACAACTTGCCCTGGAATGTGCTTCTAAACGCATGTACCCAGATATCATTAGTTCAG 154073 ||||||| | || | || ||||| ||||||||||| || || ||| || | Sbjct 105060 TCAAACAGTTAGCATTAGAGTGTGCGAGCAAACGCATGTATCCCGACATC-----TTAAA 105006 Query 154074 CTA--ACAACCGTG-CTAT-TACTGGTTCTAGCGTTCCTGTATCTCCTATGGGTTGTCGC 154129 ||| |||| || | || || || || |||| | | | || ||||| || ||| Sbjct 105005 CTATGACAAAGTTGTCGATGTAACGG-GCT--CGTT--TAAAACGCCAATGGGCTGCCGC 104951 Query 154130 AGTTTCCTTAGCGTGTGGCATGATGATAACGGTAATGAAATTCTTGATGGACGTAATAAC 154189 || || ||||| |||| | || || || || | |||||| |||||| |||||||| Sbjct 104950 AGCTT-CTTAG-GTGT-CTACGAAGAAAATGGCCAACAAATTCATGATGGCCGTAATAAT 104894 Query 154190 CTGGGTGTGGTGACAATCAACCTCCCGCGTATTGCTCTTGAAGCACA 154236 | ||||| | | | ||||| ||||||||||| ||||||| || Sbjct 104893 TTAGGTGTCATTAGCCTTAACCTGCCGCGTATTGCCATTGAAGCGCA 104847 >seq87 Length=489008 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 49480 GGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGGTTCAAG 49539 ||||| |||||| | ||||||||||| | |||||||||||| ||| ||||||||||| Sbjct 311483 GGCCCCTTAGCTCAGTTGGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 311542 Query 49540 TCCAGCAGGGGCCACCAAAT 49559 |||||||||||||||||||| Sbjct 311543 TCCAGCAGGGGCCACCAAAT 311562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570077392956440