Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_019399.1 Length=167396 Score E Sequences producing significant alignments: (Bits) Value seq253 123 3e-23 seq1596 107 2e-18 seq613 87.8 2e-12 >seq253 Length=360942 Score = 123 bits (136), Expect = 3e-23 Identities = 462/710 (65%), Gaps = 27/710 (4%) Strand=Plus/Plus Query 44231 GCAATACGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATCAAGAATTTCA 44290 |||||||| || || || || | | ||||| | ||||||||| |||||| |||||| Sbjct 104859 GCAATACGCGGCAGGTTAAGGCTAATGACACCTAAATTATTACGGCCATCATGAATTTGT 104918 Query 44291 TTACCAGTCGAATCTTTCCATACGCTCAAGAAACTACGGCAACCCATTGGAG----AAAC 44346 | ||| | |||| | || | ||||| || ||||| |||||||| | |||| Sbjct 104919 TGGCCATTT---TCTTCGTAGACACCTAAGAAGCTGCGGCAGCCCATTGGCGTTTTAAAC 104975 Query 44347 AGGAACAGATGAACCAGTGATAGCTTTATTGTTCTTAGCTGAAATAATATCAGGATACAT 44406 || | | | || || | |||| | | ||| | || || || |||||||| Sbjct 104976 --GAGCCCGTTA--CATCGACAACTTTGT----CATAGTTTAAG--ATGTCGGGATACAT 105025 Query 44407 CCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTTCGGATCGTCTTTGTA 44466 | |||||| |||||||||| || | ||| || ||||||||||| ||||| | | | Sbjct 105026 GCGTTTGCTCGCACACTCTAATGCTAACTGTTTGATATCATAGTTAGGATCACCATATTG 105085 Query 44467 AAGATTAACACCTTCTTCAACGAACATA-ACAAGCTTAGGGAAAATAGGAGTTATCCCAT 44525 |||||| |||| || || | || | || | |||||||||| | |||| | | || Sbjct 105086 GTGATTAAGGCCTTTTTTAA-TAGCAAACACTAATTTAGGGAAAACGGCAGTTTTACGAT 105144 Query 44526 CACGACCGAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCGTTCAGTCC 44585 ||| | || ||||| ||||| ||||| | || || |||| ||| | || Sbjct 105145 TTTTACCTAACCCAGCGATACGGTTTTTTAGAATGGATTGTTGGATCAAGCGTGC-TTCT 105203 Query 44586 AGTCA-GTTCCTGTACCAAATGTAATTGTTACAAAAGGCGTTTGTCCGTTTGAACTAAAG 44644 | | || ||| |||||| || ||||| || || ||||| || || | || Sbjct 105204 TGCGATGTGCCTAAACCAAACCCAAAGGTTACGAAGGGGGTTTGACCATTGGCGGTATGC 105263 Query 44645 AGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACA-TCTTTTTCTGTTTT 44703 || || || ||||| |||||| | |||||| |||||||| ||| |||||||| |||| Sbjct 105264 AGTGTGTTCACTTCGTATTCAAGGGATTGGAAGGCATCGTA-ACATTCTTTTTCGGTTTG 105322 Query 44704 AGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGCATCCTCAATATGTTT 44763 | |||||| |||||| | || ||| || || | | |||||| Sbjct 105323 GCTATCAGCATAGCCTTTCGCATCTTCAATGCCCCAATTGATCGCTGTTTTTAGATGTTT 105382 Query 44764 TGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTCG--CAAAAGTCGTT 44821 | ||||| || | |||||||||| ||| | || ||| || || | || || Sbjct 105383 TTCATAGCTGATGTGGACATAAGGAGCAAGGATTTCATC--AATGCGGTTGATGGTGGTG 105440 Query 44822 CCGCCGTATTGGTGGGAAGCAACTTGCGCAGTAATTTGTGCCATAATTGCAGTAGCAACA 44881 || || || ||| ||| ||||| || ||||||| || | | ||| || ||| Sbjct 105441 CCACCATAAATATGGCTAGCTACTTGAGCGATAATTTGGGCTGTCACTGCGGTGGCAGTG 105500 Query 44882 CCGATTGATTTAGGAGTTTCAATCTGTGCATTACCGAGCTTAAATCCGTT 44931 ||||||||||||| || || | |||||||| | ||||| || || Sbjct 105501 GAAATTGATTTAGGAGGCTCTATTTCGGCATTACCCATTTTAAACCCATT 105550 >seq1596 Length=248270 Score = 107 bits (118), Expect = 2e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 61397 ATTACAAACTCTCGGTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 61456 |||||| | | |||||| ||||||| |||||||| |||||||||| |||||||| Sbjct 48936 ATTACAGAGTACTGGTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAG 48877 Query 61457 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATA 61505 ||||||| || || |||||||| ||||||||||| ||||| || ||||| Sbjct 48876 AGTTAAAACGCACCGCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 >seq613 Length=31296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/113 (80%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 68786 GCGCTCTACCAAACTGAGCTACACGGAGTAAATTGAATTGGAGCGGATAATGAGAATCGA 68845 |||||||||||| |||||||| | || | || ||||||||| | | ||||||| Sbjct 4255 GCGCTCTACCAA-CTGAGCTATATC-AGCACATC---TTGGAGCGGGCAGCGGGAATCGA 4201 Query 68846 ACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCCATTATACGATATCCGC 68897 || | ||||||||| ||||||| |||||||||| ||||||||||||| |||| Sbjct 4200 ACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 4148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535527732766880