Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_019423.1 Length=72570 Score E Sequences producing significant alignments: (Bits) Value seq410 219 2e-52 >seq410 Length=72445 Score = 219 bits (242), Expect = 2e-52 Identities = 527/791 (67%), Gaps = 30/791 (4%) Strand=Plus/Plus Query 66949 TTTACGGATAACCTGTTAGAGTTCCGTAATGCAGAAGGGCATCGACTGGGTGTTAAGTT- 67007 ||||||||||| | | |||||| ||||| || || ||| | || ||| ||| Sbjct 22005 TTTACGGATAAGCGTATTGAGTTCGTGAATGCTGATGGTCATAAGTTTGGA-TTAGGTTT 22063 Query 67008 GTTTGGTGCTAAGACAGGTCTTCGTGGTACGAAGATATATGGTAAACGTCCAACACTCTG 67067 ||||||||||||||||||| | ||||||| || || |||||||| ||||| || || Sbjct 22064 GTTTGGTGCTAAGACAGGTATCCGTGGTAATAAAATGTATGGTAAGCGTCCTACCCTGGC 22123 Query 67068 TGTACTGGATGACTTGATTAGTGATGGTGATGCTAACTCTAAGACTAGCATGGAAGCTAT 67127 |||||| |||||||| | ||||| | |||||||| ||||| || |||||||| || Sbjct 22124 TGTACTTGATGACTTAGTGAGTGACGAGGATGCTAAGTCTAAAACAGAAATGGAAGCGAT 22183 Query 67128 TAAAGATACCGTCTATAAAGGTGTGAACCATGCTCTTGACCCAACCCGTCGTAAAGTAAT 67187 ||| || || || ||||| ||||| ||||||| ||||||||||| || | | Sbjct 22184 TAAGGACACTGTGTATAACGGTGTTGACCATGCCCTTGACCCAACAAAGAAAAAGATTGT 22243 Query 67188 CTTCAACGGTACTCCCTTTAATAAGGAAGACATTATCATTGAGGCTGTTGAGTCTGGTGC 67247 ||| || ||||| || ||||||||| | || || | |||||| |||||||| || | Sbjct 22244 CTTTAATGGTACGCCTTTTAATAAGAATGATGTTCTATATGAGGCCGTTGAGTCAGGCGG 22303 Query 67248 ATGGGATGTAAACGTATGGCCTGTATGTGAGAAGTTCCCTTGCAGTGAAGAA---GAATT 67304 ||| | || ||||| | ||| | |||||| ||||||| |||||||| ||||| Sbjct 22304 TTGGTACGTTAACGTTTACCCTATCTGTGAGCGCTTCCCTT---GTGAAGAACATGAATT 22360 Query 67305 TCAGGGTGCATGGGATGACCGTTTCTCTTACGACTACATCAAAGCCCAATACGATATGGC 67364 | ||||||||| ||| || ||||| || || | | || ||| || || |||| Sbjct 22361 TGTTGGTGCATGGCCTGAGCGATTCTCGTATGAATTTGTTAAGAGCCAGTATGAGTTGGC 22420 Query 67365 AGTTAAGACCGGTAAGCTGGCAGGCTTCTATCAGGAACTTATGCTCCGTATCAGTTCTGA 67424 || | || || | | || | || ||||||||| | ||||| ||||| Sbjct 22421 TGTGAGAACTGGGCGAATTAAATCATTTAACCAAGAACTTATGTTACGTATTGCCTCTGA 22480 Query 67425 GGATGAGAGACTGGTTCAGGATAGTGAAATTAAATGG-TACAGCAGGCAGCAGCTATTAA 67483 || |||||| || |||| | ||| |||| ||||| | | || || Sbjct 22481 TGAAGAGAGAATGATTCA--AGAGT-------CATGGATACAGTATTACTCTCGTACAAA 22531 Query 67484 --GGATGAAATCCTGCTACA--------ACTATTACATTACAACTGACTTTGCTACTTCG 67533 |||| | | | |||| | ||||||||||| || ||||||||| || Sbjct 22532 TCTCATGACA--CAGTTACAGAATTATCATTATTACATTACCACAGACTTTGCTGTCTCT 22589 Query 67534 GAGAAACAGACCAGTGACTACAGTGTCATATCAGTTTGGGCTTATAGTTCTAATGGAGAT 67593 ||| ||| ||||||||||||||| |||||||| ||| | | | || || Sbjct 22590 TCTAAAGAGAGTGCTGACTACAGTGTCATTATTGTTTGGGCGTATGACTATCAAGGTAAT 22649 Query 67594 TGGTTCTGGGTTGATGGTGTGGCTAATCGCCAGCTTATGGATAAAAACTTTGATGACCTG 67653 |||| || ||| |||||| | || || ||||| ||| || |||| | Sbjct 22650 TGGTACTTGGTAGATGGTATTTGCAAGAAACAAGAGATGGACGCTAACCTTAATGATTTA 22709 Query 67654 TTCCGTCTGGTTCAGGAATACCAACCACAAAACGTTGGTGTCGAAATTACAGGACAACAG 67713 ||| | |||||||| || | ||||| |||||||| ||| | ||||| || || Sbjct 22710 TTCAGACTGGTTCAAATTTATAACCCACAGTCTGTTGGTGTAGAAGTAACAGGTCAGCAA 22769 Query 67714 AATGGATTCAT 67724 | ||| ||||| Sbjct 22770 AGTGGTTTCAT 22780 Score = 185 bits (204), Expect = 4e-42 Identities = 663/1016 (65%), Gaps = 33/1016 (3%) Strand=Plus/Plus Query 7643 TACGTTCCTCTGCTCGACGATAAGAACATTAACGACCAGGGTATTGATGCCAGTGGTGCT 7702 ||| |||| |||| || || ||| | |||||||| ||||| ||||| ||| | | Sbjct 34306 TACATTCCATTGCTGGATGACCGTAACGTGAACGACCAAGGTATCGATGCTTCTGGCGTT 34365 Query 7703 ACCATCGTTAATGGTAACCTGTATGGTTCGTCTAAAGACGTCGGTAACATCACCTCTAAA 7762 | ||| |||||||| | || ||||| ||||||||||| ||||| ||| |||| Sbjct 34366 AAAATCAAAGATGGTAACTTATACGGTTCTTCTAAAGACGTTGGTAAAATCCTTGATAAA 34425 Query 7763 CTGCCTCTGCTGACAGAGAATGGTGGTCGTGTTAACCGTGTAGGCTTTACCCGTCTGTCT 7822 |||| || || | |||||||||||||||||||| || | ||||||| Sbjct 34426 ATGCCGTACATGGGTGAAGAAGGTGGTCGTGTTAACCGTGTTGGTACTGTCCGTCTGGAA 34485 Query 7823 CGTGAAGGTTCCATTCATAAGTTTGGTTTCTTCTACGAATTTACTCAAGAGTCCTTGGAC 7882 ||||||||||| ||| | ||| ||||| || | ||| |||| || | ||| Sbjct 34486 ATCAAAGGTTCCATTTCTAAAATGGGTATCTTCCGTGAGTGGACTAAAGACTCTATCGAC 34545 Query 7883 TTTGATTCTGATGACCAA--CTGAAAGAACATCTGTCACGTGAACTGATGAACGGTGCTG 7940 |||||| |||| || | |||| ||||| || ||||||||| | | ||||| | Sbjct 34546 TTTGATACTGA--CCCGATGCTGATGAAACATATGCAGCGTGAACTGGTAACAGGTGCGG 34603 Query 7941 TACAGTTGACTGAAGCTGTTCTTCAGAAAGACCTGTTGGCTGCTGCTGGTACTGTACTGT 8000 |||| | ||||||| | || | | || |||| | |||||||||| | ||| Sbjct 34604 TACAAATCACTGAAGACATGCTCGAAATTGAGTTGTTACAAGGTGCTGGTACTATCATGT 34663 Query 8001 ATGCAGGTGCTGCTACCTCTGATGCTACCATCACTGGTGAAGGTGC--TACTCCGTCTGT 8058 ||| |||| || |||| | ||||||||||||||||| || || |||| Sbjct 34664 TTGCTGGTGTGGCATTGAAAGATGATGAAATCACTGGTGAAGGTGCGGTAATC--TCTGA 34721 Query 8059 AGTTTCTTATAAGAACCTGATGCGTCTTGACCAGATTCTTACTGAGAACCGTACCCCGAC 8118 |||| ||||| |||| ||| ||| | || | ||||||| || |||||||| || Sbjct 34722 AGTTACTTATGAGAATCTGCAACGTTTAGATGATATTCTTAACGAAAACCGTACACCACG 34781 Query 8119 TCAGACTACTATCATCACTGGTTCTAAACTGACGGATAC-CAAAGTACTAGGTGGTACTC 8177 | | ||| | |||| |||||| | | || ||||| ||| || | || | ||| Sbjct 34782 TAACACTGACGTTATCAAAGGTTCTCCATTCACTGATACGAAAACTATTCCGT-CTGCTC 34840 Query 8178 GTGTAATGTATGTTGGTTCTGAACTGGT-TCCAGAACTGAAAGCGATGAAAGACCTGTTC 8236 || |||||| | ||| |||||| | | | | | | | |||||||| || Sbjct 34841 GTTATATGTATATCGGTAACGAACTGCTGACTACTATTCGTAAC-ATGAAAGATAACTTT 34899 Query 8237 GGTAACAAAGCATTCATCGAAATTCAGCACTATGCTGATGCTGGTACTCTGATGAATGGC 8296 ||||| ||| || || | || |||||||||| || ||| | | |||| Sbjct 34900 GGTAATCCAGCGTTTATTCCTGTACAACACTATGCTGCGGCAGGTCATATCGCACATGGT 34959 Query 8297 GAAGTTGGTTGTATCGACAAGTTCCGTATTAT--TCAGGTTCCGGAGATGC--TGCATTG 8352 |||||||||| | | | | |||||| | || | | ||| |||| || | Sbjct 34960 GAAGTTGGTTCTGTTGGCCCATTCCGTGTAATTGTGAACTTC----AATGCGAAACACTT 35015 Query 8353 GGCAGGTGCTGGTGCTCAAGCTACTACTAACCCTGGCTACCGTTCTACTATGGTTGGTGG 8412 || ||| |||||| || ||||| | | ||| | |||| || Sbjct 35016 TGCTGGTAAAGGTGCT---GCGGTAACTAA-CAAAGATACTAT----CTATCGTAACACT 35067 Query 8413 GCAAGAACACTACGACGTATTTCCGATGCTGGTAGTTGGTGATGACTCCTTCTCTACCAT 8472 | | || | || || | || || ||| |||| ||||||| || || || |||| | Sbjct 35068 G-ACGATAAATATGATATCTTCCCAATGATGGTTGTTGGTGGTGGTTCATTTACTACTGT 35126 Query 8473 TGGCTTCCAGACTGATGGTAAGTCTGT-TAAGTTCACCATC-ATGACTAAGATGCCTGGT 8530 |||||| | ||| || ||| || ||||||| | || || ||||| ||||||| Sbjct 35127 TGGCTTTGAAGCTGCAGG-CCGTCAGTATAAGTTC-CAGTCAATTACTAAAGTGCCTGGG 35184 Query 8531 AAAGAAACTGCTGACCGTAATGACCCGTATGGTGAGACTGGTTTCAGTTCTATCAAGTGG 8590 || |||||||||||||| ||||||| |||||| | ||||| |||| ||||| |||| Sbjct 35185 GAACAAACTGCTGACCGTCATGACCCATATGGTCAAACTGGATTCACCTCTATGTTGTGG 35244 Query 8591 TACTACGGTATTCTGGTTAAACGTCCAGAACGTCTGGCTATGATTAAGACTGTTGC 8646 | |||||||| | || || | || ||| |||| |||||||| || ||||| Sbjct 35245 TGGTACGGTATGTTAATTCTTCGCTCTGAGCGTTTGGCGATGATTAAAACAGTTGC 35300 Score = 95.1 bits (104), Expect = 6e-15 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 36893 TCTACCGTGTCTTCAATGTCTGGCATCTGCTCACCAAAGTAAGCATATGCACGGAGACTG 36952 ||||| || || |||| |||||||| | || |||||| | ||||| | || | Sbjct 61701 TCTACAGTTTCAACAATATCTGGCATACGGTCTTTGAAGTAATAGAAAGCACGCAAACAG 61760 Query 36953 TGCCCATCATAGCCATCGGTATACACCTTAAGCTTCTGTGGGTCTTTAGTAGTCAGTGCA 37012 || |||||||| ||||| |||||||||||||| || | ||||||||||| || | || Sbjct 61761 TGTCCATCATAACCATCTGTATACACCTTAAGTTTATTAGGGTCTTTAGTGGTTAAAGCG 61820 Query 37013 GAGATTCTGTCTTCCAG 37029 || ||||||||||| || Sbjct 61821 GATATTCTGTCTTCAAG 61837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232094354421483