Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_019503.1 Length=166499 Score E Sequences producing significant alignments: (Bits) Value seq253 107 2e-18 seq1596 100 3e-16 seq613 87.8 2e-12 >seq253 Length=360942 Score = 107 bits (118), Expect = 2e-18 Identities = 456/708 (64%), Gaps = 23/708 (3%) Strand=Plus/Plus Query 41867 GCAATGCGAGGAAGATTCAGTGTTACAACGCCAAGATTATTACGTCCATCAAGAATTTCA 41926 ||||| || || || || || | | || || | ||||||||| |||||| |||||| Sbjct 104859 GCAATACGCGGCAGGTTAAGGCTAATGACACCTAAATTATTACGGCCATCATGAATTTGT 104918 Query 41927 TTACCAGTCGAATCTTTCCATACGCTCAAGAAACTACGGCAACCCATTGGAGAAACAGGA 41986 | ||| | |||| | || | ||||| || ||||| |||||||| | Sbjct 104919 TGGCCATTT---TCTTCGTAGACACCTAAGAAGCTGCGGCAGCCCATTGGCGTTT----- 104970 Query 41987 ATAGATGAACCGGTGATAGCTTTA--TTGTTCTTAGCTGAAATAATATCAGGATACATTC 42044 || | || || || | | | | || || ||| | || || || |||||||| | Sbjct 104971 -TAAACGAGCCCGTTACATCGACAACTTTGTCATAGTTTAAG--ATGTCGGGATACATGC 105027 Query 42045 TTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTTCGGATCGTCTTTATAAA 42104 |||||| |||||||||| || | ||| || ||||||||||| ||||| | | | Sbjct 105028 GTTTGCTCGCACACTCTAATGCTAACTGTTTGATATCATAGTTAGGATCACCATATTGGT 105087 Query 42105 GATTAACGCCTTCTTCAACGAACATA-ACAAGCTTAGGGAAAATAGGAGTTATCCCATCG 42163 |||||| ||||| || || | || | || | |||||||||| | |||| | | || Sbjct 105088 GATTAAGGCCTTTTTTAA-TAGCAAACACTAATTTAGGGAAAACGGCAGTTTTACGATTT 105146 Query 42164 CGACCAAGACCTTTAATGCGATTTTTCAGAATTGCTTTCTGAATCATTCGTTCAGTCCAG 42223 ||| | || || || ||||| ||||| | || || |||| ||| | || | Sbjct 105147 TTACCTAACCCAGCGATACGGTTTTTTAGAATGGATTGTTGGATCAAGCGTGC-TTCTTG 105205 Query 42224 TCA-GTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTGTCCATTTGAACTAAAGAG 42282 | || || |||||| || ||||| || || ||||| ||||| | || || Sbjct 105206 CGATGTGCCTAAACCAAACCCAAAGGTTACGAAGGGGGTTTGACCATTGGCGGTATGCAG 105265 Query 42283 AGTATTTACTTCATATTCATAAGCTTGGAATGCATCATATACA-TCTTTTTCTGTTTTAG 42341 || || ||||| |||||| | |||||| ||||| || ||| |||||||| |||| Sbjct 105266 TGTGTTCACTTCGTATTCAAGGGATTGGAAGGCATCGTA-ACATTCTTTTTCGGTTTGGC 105324 Query 42342 ATTGGGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGCATCCTCAATATGTTTTG 42401 | ||||| |||||| | || ||| || || | | ||||||| Sbjct 105325 TATCAGCATAGCCTTTCGCATCTTCAATGCCCCAATTGATCGCTGTTTTTAGATGTTTTT 105384 Query 42402 CATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTCG--CAAAAGTCGTTCC 42459 ||||| || | |||||||||| ||| | || ||| || || | || || || Sbjct 105385 CATAGCTGATGTGGACATAAGGAGCAAGGATTTCATC--AATGCGGTTGATGGTGGTGCC 105442 Query 42460 GCCATATTGATGAGAAGCAACCTGTGCAGTAATTTGTGCCATAATTGCAGTAGCAACGCC 42519 ||||| ||| ||| || || || ||||||| || | | ||| || ||| | Sbjct 105443 ACCATAAATATGGCTAGCTACTTGAGCGATAATTTGGGCTGTCACTGCGGTGGCAGTGGA 105502 Query 42520 GATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAAATCCGTT 42567 ||||||||||||| || || | |||||||| | ||||| || || Sbjct 105503 AATTGATTTAGGAGGCTCTATTTCGGCATTACCCATTTTAAACCCATT 105550 >seq1596 Length=248270 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 60084 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60143 || || ||||||| |||||||| |||||||||| ||||||||||||||| || || Sbjct 48922 GTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAGAGTTAAAACGCACC 48863 Query 60144 GCATAACCGGATACACGGATGGTCAGCTGCGGATA 60178 |||||||| ||||||||||| ||||| || ||||| Sbjct 48862 GCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 >seq613 Length=31296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/113 (80%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 69598 GCGCTCTACCAAACTGAGCTACACGGAGTAAATTAAATTGGAGCGGATAATGAGAATCGA 69657 |||||||||||| |||||||| | || | || ||||||||| | | ||||||| Sbjct 4255 GCGCTCTACCAA-CTGAGCTATATC-AGCACATC---TTGGAGCGGGCAGCGGGAATCGA 4201 Query 69658 ACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 69709 || | ||||||||| ||||||| ||||||||||| |||||||||||| |||| Sbjct 4200 ACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 4148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532657394229320