Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_019505.1 Length=166452 Score E Sequences producing significant alignments: (Bits) Value seq253 120 3e-22 seq1596 100 3e-16 seq613 87.8 2e-12 >seq253 Length=360942 Score = 120 bits (132), Expect = 3e-22 Identities = 445/683 (65%), Gaps = 27/683 (4%) Strand=Plus/Plus Query 41813 ACACCAAGATTATTACGTCCATCAAGAATTTCATTACCAGTCGAATCTTTCCATACGCTC 41872 ||||| | ||||||||| |||||| |||||| | ||| | |||| | || | Sbjct 104886 ACACCTAAATTATTACGGCCATCATGAATTTGTTGGCCATTT---TCTTCGTAGACACCT 104942 Query 41873 AAGAAACTACGGCAACCCATTGGAG----AAACAGGAACAGATGAACCAGTGATAGCTTT 41928 ||||| || ||||| |||||||| | |||| || | | | || || | |||| Sbjct 104943 AAGAAGCTGCGGCAGCCCATTGGCGTTTTAAAC--GAGCCCGTTA--CATCGACAACTTT 104998 Query 41929 ATTGTTCTTAGCTGAAATAATATCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAG 41988 | | ||| | || || || |||||||| | |||||| |||||||||| || | Sbjct 104999 GT----CATAGTTTAAG--ATGTCGGGATACATGCGTTTGCTCGCACACTCTAATGCTAA 105052 Query 41989 CTGCTTAATATCATAATTCGGATCGTCTTTGTAAAGATTAACGCCTTCTTCGACGAACAT 42048 ||| || |||||||| || ||||| | | | |||||| ||||| || | | || Sbjct 105053 CTGTTTGATATCATAGTTAGGATCACCATATTGGTGATTAAGGCCTTTTTTAAT-AGCAA 105111 Query 42049 A-ACAAGCTTAGGAAAAATAGGAGTTATCCCATCACGACCGAGACCTTTAATGCGGTTTT 42107 | || | ||||| |||| | |||| | | || ||| | || || ||||||| Sbjct 105112 ACACTAATTTAGGGAAAACGGCAGTTTTACGATTTTTACCTAACCCAGCGATACGGTTTT 105171 Query 42108 TAAGAATTGCCTTCTGAATCATTCGTTCAGTCCAGTCA-GTTCCCGTACCAAATGTAATT 42166 | ||||| | | || |||| ||| | || | | || || |||||| || Sbjct 105172 TTAGAATGGATTGTTGGATCAAGCGTGCT-TCTTGCGATGTGCCTAAACCAAACCCAAAG 105230 Query 42167 GTTACAAAAGGCGTTTGTCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCT 42226 ||||| || || ||||| || || | || || || || ||||| |||||| | | Sbjct 105231 GTTACGAAGGGGGTTTGACCATTGGCGGTATGCAGTGTGTTCACTTCGTATTCAAGGGAT 105290 Query 42227 TGGAATGCATCGTATACAT-CTTTTTCTGTTTTAGATTGAGCATAATTTAACGCATCAGC 42285 ||||| |||||||| |||| ||||||| |||| | |||||| | |||||| | Sbjct 105291 TGGAAGGCATCGTA-ACATTCTTTTTCGGTTTGGCTATCAGCATAGCCTTTCGCATCTTC 105349 Query 42286 GATTTGCCATTTTTCTGCATCCTCAATATGTTTTGCATAGGTGCGTTTAACATAAGGAGA 42345 || ||| || || | | ||||||| ||||| || | |||||||||| Sbjct 105350 AATGCCCCAATTGATCGCTGTTTTTAGATGTTTTTCATAGCTGATGTGGACATAAGGAGC 105409 Query 42346 AAGTACTTTATCTA--CATTAGCAAAAGTCGTTCCGCCATATTGATGGGAAGCAACTTGC 42403 ||| | || ||| | | | | | || || || ||||| |||| ||| ||||| Sbjct 105410 AAGGATTTCATCAATGCGGTTG--ATGGTGGTGCCACCATAAATATGGCTAGCTACTTGA 105467 Query 42404 GCAGTAATTTGTGCCATAATTGCAGTAGCAACGCCAATTGATTTAGGAGTTTCAATCTGT 42463 || ||||||| || | | ||| || ||| | |||||||||||||| || || | Sbjct 105468 GCGATAATTTGGGCTGTCACTGCGGTGGCAGTGGAAATTGATTTAGGAGGCTCTATTTCG 105527 Query 42464 GCATTACCAAGCTTAAATCCGTT 42486 |||||||| | ||||| || || Sbjct 105528 GCATTACCCATTTTAAACCCATT 105550 >seq1596 Length=248270 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 61101 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61160 || || ||||||| |||||||| |||||||||| ||||||||||||||| || || Sbjct 48922 GTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAGAGTTAAAACGCACC 48863 Query 61161 GCATAACCGGATACACGGATGGTCAGCTGCGGATA 61195 |||||||| ||||||||||| ||||| || ||||| Sbjct 48862 GCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 >seq613 Length=31296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/113 (80%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 69938 GCGCTCTACCAAACTGAGCTACACGGAGTAAATTAAATTGGAGCGGATAATGAGAATCGA 69997 |||||||||||| |||||||| | || | || ||||||||| | | ||||||| Sbjct 4255 GCGCTCTACCAA-CTGAGCTATATC-AGCACATC---TTGGAGCGGGCAGCGGGAATCGA 4201 Query 69998 ACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 70049 || | ||||||||| ||||||| ||||||||||| |||||||||||| |||| Sbjct 4200 ACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 4148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532506997449760