Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_019529.1 Length=111506 Score E Sequences producing significant alignments: (Bits) Value seq253 145 5e-30 >seq253 Length=360942 Score = 145 bits (160), Expect = 5e-30 Identities = 285/418 (68%), Gaps = 14/418 (3%) Strand=Plus/Minus Query 28543 TGAGTATGGGGAGTTCGAAGGAGTAACTGACAAAGGTTACTTAACAAACTCATTCCACTT 28602 ||||| ||||| ||||||| || || || |||||||||| || || |||||| | Sbjct 104429 TGAGTTTGGGGTTATCGAAGGTGTTACGGAAAAAGGTTACTACACCAATAGTTTCCACCT 104370 Query 28603 AGACGTACTGAAGAAGG--TAAACCCGTATGATAAAATCGACTTTGAAGCGCAATTCATC 28660 || || |||| || | | ||||| || ||||| || || |||||| || ||| Sbjct 104369 TGATGT--TGAAAAACGCGTTAACCCATACGATAAGATTGATTTTGAACAGC----CATA 104316 Query 28661 CCATACAGCTCC-----GGTGGTCATATCTGCTACGGGGAATTCCCTAATATGCGCCACA 28715 || | | ||| || ||| ||| |||||||| || | || || | | |||| Sbjct 104315 CCCTGCT-CTCGCAAATGGCGGTTTTATTTGCTACGGCGAGTATCCAAACTTACAGCACA 104257 Query 28716 ATATTGAAGCACTCGAAAATGTGTGGGATTACGCCTACACCAAAGTCCCATACTACGGCA 28775 | | ||||||| ||| | || ||||| ||| ||| | || || || || || | Sbjct 104256 ACTTGAAAGCACTTGAAGACGTTTGGGACTACAGCTATGAGCATGTACCTTATTATGGAA 104197 Query 28776 CCAACACACCAATTGATGAATGCTATAGCTGCGGATTCAAAGGTGAGTTCAATTGTACAA 28835 ||||||| || ||||||||||| ||| || ||||| | ||||| || || ||||| | Sbjct 104196 CCAACACGCCTATTGATGAATGTTATGAATGTGGATTTACCGGTGAATTTAACTGTACCA 104137 Query 28836 GCAAAGGTTTTGAGTGTCCTAACTGCGGAAACCACGACCCAGAGAAATGCTCTGTCACCA 28895 | |||||||||| ||| || || || ||||| ||| | | ||| || | | Sbjct 104136 GTAAAGGTTTTGTGTGCCCACGTTGTGGTAACCATGACACCAACCGTGTCTCCGTGATCC 104077 Query 28896 GACGAGTGTGTGGCTACCTAGGTAATCCTGGTACTCGTCCATTCAATGCAGGTAAACA 28953 | |||||||||| || ||||||| || | | |||| ||||| || || |||||||| Sbjct 104076 GTAGAGTGTGTGGTTATCTAGGTAGCCCAGATGCTCGACCATTTAACGCGGGTAAACA 104019 Score = 116 bits (128), Expect = 3e-21 Identities = 254/378 (67%), Gaps = 2/378 (1%) Strand=Plus/Minus Query 27650 ACTGAAAAAGACGTATTCGATGCTTGTCAGACTCTAGAATACCAAGTAAATACTATTTAC 27709 || |||||||| | |||||| | || | || |||||| |||| || || | | Sbjct 105319 ACCGAAAAAGAATGTTACGATGCCTTCCAATCCCTTGAATACGAAGTGAACACACTGCAT 105260 Query 27710 TCAACTAATGGTCAGACTCCGTTCTTGACATTTGGATTCGGTCTAGGTACTTCTTGGGAA 27769 | | |||||||| || || ||| | || ||||| || ||| |||| || || ||| Sbjct 105259 ACCGCCAATGGTCAAACCCCCTTCGTAACCTTTGGGTTTGGTTTAGGCACATCGCAAGAA 105200 Query 27770 GCTAAACTAGTTCAGA-AAGGTATTCTACAGAATCGTATTGCTGGTCTAGGTAAAGAAGG 27828 || | || | || | || |||||| | || ||||| ||||| |||||||| | | Sbjct 105199 GC-ACGCTTGATCCAACAATCCATTCTAAAAAACCGTATCGCTGGGTTAGGTAAAAATCG 105141 Query 27829 TACTACTCCGGTATTCCCTAAGCTAGTATTTGGTCTCAAAGATGGGGTAAACCTGAAGCC 27888 || ||| | || |||||||| |||| |||| | | ||| | || | || | | Sbjct 105140 TAAAACTGCCGTTTTCCCTAAATTAGTGTTTGCTATTAAAAAAGGCCTTAATCACCAATA 105081 Query 27889 AGAAGACCCTAACTACGATATTAAGCAGCTTGCATTAGAATGTGCTACTGTTCGCATGTA 27948 | || |||||||| ||||| || ||| | |||||||| ||||| | |||||||| Sbjct 105080 TGGTGATCCTAACTATGATATCAAACAGTTAGCATTAGAGTGTGCGAGCAAACGCATGTA 105021 Query 27949 TCCAGACATACTTAACTACGATAAGACTGTTGAAATTACAGGCGGATATAAAGCACCTAT 28008 ||| ||||| | ||||| || || ||| || | || ||| | |||| | || || Sbjct 105020 TCCCGACATCTTAAACTATGACAAAGTTGTCGATGTAACGGGCTCGTTTAAAACGCCAAT 104961 Query 28009 GGGCTGTCGCTCATTCTT 28026 |||||| ||| ||||| Sbjct 104960 GGGCTGCCGCAGCTTCTT 104943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356686953224131