Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq87 123 4e-23 seq253 91.5 2e-13 seq165 89.7 8e-13 >seq87 Length=489008 Score = 123 bits (136), Expect = 4e-23 Identities = 77/83 (93%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 198932 TTTGGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTC 198991 ||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| Sbjct 311480 TTTGGCCCCTTAGCTCAGTTGGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTC 311539 Query 198992 GAGTCCAGTAGGGGCCACCAGAT 199014 ||||||| ||||||||||| || Sbjct 311540 AAGTCCAGCAGGGGCCACCAAAT 311562 >seq253 Length=360942 Score = 91.5 bits (100), Expect = 2e-13 Identities = 170/247 (69%), Gaps = 16/247 (6%) Strand=Plus/Plus Query 115761 CCACAATCAAAACACTGGTCGATTGGGGTATTTGTCCCATAATAAGGGGTATTTTGATAC 115820 ||||| ||| |||| | || || || || || || ||||||||||| || | ||| Sbjct 104163 CCACATTCATAACATTCATCAATAGGCGTGTTGGTTCCATAATAAGGTACATGCTCATAG 104222 Query 115821 GCAAAATCCCAAACATCTTCGAGTGCCTTTAAGTTATTTTTCATATTTGGAAATTCGCCA 115880 | |||||||| ||||| ||||| || ||||| | | | |||||| | ||||| Sbjct 104223 CTGTAGTCCCAAACGTCTTCAAGTGCTTTCAAGTTGTGCTGTAAGTTTGGATACTCGCCG 104282 Query 115881 TATGAAATAAAACCACCTTTCG----AATATGTAATGAAATCTCGTTCAAACAGGATCTT 115936 || |||||||||| || || | | | | ||| || ||||||| ||||| Sbjct 104283 TAGCAAATAAAACCGCCATTTGCGAGAGCAGGGTATGG---CT-GTTCAAAATCAATCTT 104338 Query 115937 GTGGTATGGGTCT----GTTTTATACTCAACGTCAAGATGGAAACTATTCGTGTAATATC 115992 | |||||||| ||||| ||||| ||||| ||||||||||| ||||| || | Sbjct 104339 ATCGTATGGGTTAACGCGTTTT----TCAACATCAAGGTGGAAACTATTGGTGTAGTAAC 104394 Query 115993 CTTTTTC 115999 ||||||| Sbjct 104395 CTTTTTC 104401 >seq165 Length=448888 Score = 89.7 bits (98), Expect = 8e-13 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 199778 TTTTCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTT 199836 ||||||| || |||||||| |||||||||| ||||||||||||||| ||||| ||||| Sbjct 330614 TTTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAGTGGGTCGGAGGTT 330555 Query 199837 CGAGTCCTGTATCACCGACCA 199857 ||| |||| | || ||||||| Sbjct 330554 CGAATCCTCTCTCGCCGACCA 330534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741433723710440