Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_019708.1 Length=37595 Score E Sequences producing significant alignments: (Bits) Value seq1596 814 0.0 >seq1596 Length=248270 Score = 814 bits (902), Expect = 0.0 Identities = 1496/2162 (69%), Gaps = 58/2162 (3%) Strand=Plus/Minus Query 1 ATGTCTGGACCACCGAAAACCCCGACCCATCTACGTTTGGTAAGGGGTAACCCATCTAAA 60 ||| |||||||||| ||||||||| | ||||| | || || ||||| |||||||| ||| Sbjct 99155 ATGGCTGGACCACCTAAAACCCCGTCACATCTGCAATTAGTGAGGGGGAACCCATCAAAA 99096 Query 61 CGCCCGATCAATGAGAACGAACCAAAACCCCCTTCAGGGGTACCCACAACGCCGAAGCAT 120 ||||| || ||| | | ||||||||||| || |||||||||||| ||| || ||| || Sbjct 99095 CGCCCCATTAATAAACAAGAACCAAAACCGCCGTCAGGGGTACCCCAAACCCCAAAGTAT 99036 Query 121 TTCGACAAGCAGGGGAAATACTGGTTTAAACGGATGGCCGACGAGCTTGATGCTATCGGT 180 || || |||| ||| || || ||||| || |||| ||| ||| | ||||| | ||| Sbjct 99035 TTTGATAAGCGGGGTAAGTATTGGTTCAAGAAAATGGGCGAAGAGTTAGATGCATTGGGT 98976 Query 181 GTGATGT-CTCAGCTGGACGCCAGAGCCCTTGAGCTGCTGGTTGAGGCTTATACCGAATA 239 || ||| | || || || || | ||| || || | | |||||||| || || || Sbjct 98975 GTCATGAGCACA-CTCGATGCAAAAGCTCTGGAATTATTAGTTGAGGCATACGTTGAGTA 98917 Query 240 CCGGCATCACTGCGACACGCTTGAAGTTGAGGGCTACACCTACCGGACCGAAACG-CA-- 296 ||||||||||||||| ||| || ||| || || |||||| ||| ||| || Sbjct 98916 CCGGCATCACTGCGAAGTGCTCGATACTGAAGGTTATACCTACAACACC---ACGTCAAT 98860 Query 297 GAGCGGGGATGTGCTGATCAAGGCTCATCCCGCCGCCATCATGAAAGCTGATGCCTGGAA 356 || || | | | | || || ||||| || || |||||||| |||| ||||| Sbjct 98859 GACTGGCGGCATTATCAAAAAAGCACATCCAGCGGCTGCAATGAAAGCCGATGTTTGGAA 98800 Query 357 ACGTCTGCGCGCCATGCTTGGTGAGTTCGGCATGACGCC---AGCCAGTCGCTCGAAAGT 413 || | || || ||||| |||| || |||||||| || ||| || | ||||| Sbjct 98799 GCGAATCCGAGCTATGCTCAGTGAATTTGGCATGACACCTTCAGCAAGAA---CAAAAGT 98743 Query 414 GAATGCAAAAGGCCCTGATGCGGTTGACCCGCTGGCCGAGTTTATGAAA----GCGAGGG 469 | || ||||| ||||| || || || || | | ||| ||||| || | | Sbjct 98742 CAGTGTCAAAGGTCCTGAGCAGGAAGATCCACTAGAAGCATTTCTGAAAAAGCGCAAATG 98683 Query 470 ATTAATGGCTAAGGTTGCAGAAGGCATCCGCTACGCCGAGAGGGTGGTGGCGGGGGAAAT 529 || |||||| | || ||||| || || | ||||||||| ||| ||||| || ||||| Sbjct 98682 ATGAATGGCAACCGTAGCAGATGGAATTCAGTACGCCGAGCAGGTCGTGGCTGGAGAAAT 98623 Query 530 TATTGCCTGTGAGTATGTGCGCCTTGCCTGTCAGCGTTTCCTTGACGATCTGGCACACGG 589 | |||| || || | |||||| | || || |||||||| | | ||| | | || || Sbjct 98622 TGTTGCGTGCGAATTGGTGCGCTTAGCGTGCCAGCGTTTTTTAAATGATTTAGAGCATGG 98563 Query 590 CGAAGAGCGCGGTATTTTCTTCAGTGAGCCGCGCGCACAGCACATTCTGAATTTCTATAA 649 ||||| | || | |||| ||| |||||||||||||| || | || || || Sbjct 98562 TCCTGAGCGTGACATCTATTTCATTGAAGATCGCGCACAGCACATACTTGACTTTTACAA 98503 Query 650 TTTTGTGCCTCACGTAAAAGGCGCGCTGGCAGGACAGCCTATTGAGCTGATGGACTGGCA 709 |||| | || || || ||||| || |||| ||| |||| ||||| | ||| ||||| Sbjct 98502 TTTTATCCCGCATGTCAAAGGGGCATTGGCTGGAAAGCCGATTGATTTAATGCCGTGGCA 98443 Query 710 CGTTTTCATCCTGATTAATATTTTTGGTTTCGTTATCCCGCTGGTTAACGAAGAAACGGG 769 || || ||| ||||||||||||| || ||||| |||||| | || | ||| ||| || Sbjct 98442 TGTCTTTATCTTGATTAATATTTTCGGGTTCGTGATCCCGTTAATTGATGAATTAACCGG 98383 Query 770 AGAAACCGTCCTGCGTAATGACGGCAGCGGTCGTCCAGTAATGGTTAGGCGCTTTCGTAC 829 ||| || || | |||| || | ||| | | ||| | || ||||| || Sbjct 98382 TGAACAAGTTCTTGATGATGATGGTGATG-----CCA-TCTTTGTTCGTCGTTTTCGAAC 98329 Query 830 AGCAGATGTTGAGGTAGCCCGTAAAAATGCCAAATCAACGCTTTGCTCCGGCGTGGGGCT 889 ||| | ||| || || ||||| ||||| ||||||||||| | | ||| | || | Sbjct 98328 CGCATTTAATGAAGTGGCTCGTAAGAATGCAAAATCAACGCTCTCCAGCGGTATCGGTTT 98269 Query 890 TTATATGGCTGGCGCCGACGGCGAGGGCGGTGCTGAGGTTTATTCCGCTGCAACCACCCG 949 || ||| | || || || |||||||| ||||||||||||||||| || ||||| || || Sbjct 98268 GTACATGACCGGGGCTGATGGCGAGGGTGGTGCTGAGGTTTATTCAGCCGCAACGACTCG 98209 Query 950 TGACCAGGCTCGAATTGTTTTTGAAGACGCGAAGAATATGGTCAAAAAGGCGAAAGCCAC 1009 || ||||| || ||||| |||||||| || || |||||||||||||| |||||| | || Sbjct 98208 CGATCAGGCACGTATTGTGTTTGAAGATGCCAAAAATATGGTCAAAAAAGCGAAAACAAC 98149 Query 1010 GCTTGGGCGGATCTTCGAATTCAACAAGCTCGCTATCTACCAGGAGCAAACGGCCTCCAA 1069 ||| || || | || || | ||||||| | || || ||||| |||| |||||| || || Sbjct 98148 GCTAGGTCGCTTATTTGATTACAACAAGTTAGCGATTTACCAAGAGCGAACGGCGTCTAA 98089 Query 1070 GTTCGAGCCATTATCATCAGATGCGAACAACCTCGATGGTCTGAACATCCACTGCGCTAT 1129 || || ||| | || |||||||| ||||||||||| |||| || || |||| || Sbjct 98088 ATTTGAACCACTTTCCAGTGATGCGAATAACCTCGATGGCTTGAATATTCATTGCGGGAT 98029 Query 1130 CGTAGACGAGCTGCATGCTCACAAAACCCGTGACGTCTGGGACGTTCTGGAGACGGCAAC 1189 || || ||||| |||||||| || || || || || ||||| ||||| || || ||||| Sbjct 98028 AGTCGATGAGCTCCATGCTCATAAGACTCGCGATGTGTGGGATGTTCTTGAAACAGCAAC 97969 Query 1190 CGGTGCGCGTCTGCAATCGCTGCTTTTCGGTATCACCACCGCCGGTTTCAACAAAGAAGG 1249 ||||| || |||| ||||| | || | ||||| || | ||||| |||||||| || Sbjct 97968 AGGTGCACGATTGCAGTCGCTTTTATTTGCCATCACAACATCGGGTTTTAACAAAGAGGG 97909 Query 1250 CATCTGCTACGAATTGCGTGATTACGCCATCAAGGTGCTGCGTGGGCTGGTAAAAGACGA 1309 ||||| ||||| || || |||||||| || || || || || | || | || || Sbjct 97908 GATCTGTTACGAGTTACGGGATTACGCAATTAAAGTTCTAACGGGTATTGTTGATGATGA 97849 Query 1310 TACGTTTTTTGCCATTATCTACACCTTAGATGAAGGTGACGATCCCTTTGATGAAAAAGT 1369 || || ||||||||||| || ||| | ||||| || |||||| ||||||||| || Sbjct 97848 CACTTTCTTTGCCATTATTTATACCCTCGATGAGGGCGACGATGATTTTGATGAATCCGT 97789 Query 1370 CTGGCAGAAGGCGAATCCGGGGCTGGGTATCTGTAAGCGCTGGGATGACCTGCGCCGCCT 1429 ||| || || ||||| ||||| ||| | |||||||| | ||||| |||| || || Sbjct 97788 TTGGATAAAAGCTAATCCTGGGCTTGGTGTTTGTAAGCGTTTCGATGATATGCGACGTCT 97729 Query 1430 GGCTAAAAAGGCGAAAGAGCAAGTTTCGGCCAGAATTAACTTTTTCACCAAGCACATGAA 1489 ||| || ||||||||||||||| || | || | ||||||| |||| |||||| | || Sbjct 97728 GGCCAAGAAGGCGAAAGAGCAAATTGCTGCTCGTCCTAACTTTCTCACTAAGCACCTTAA 97669 Query 1490 TATCTGGGTTACCGCTGAGTCAGCCTGGATGGACATGATGAAATGGGA-GAAATGTGAGT 1548 || ||||| | || ||||||| ||||||||||||| |||||||| | || Sbjct 97668 TAAGTGGGTGAATGCCGAGTCAGTATGGATGGACATGAGCAAATGGGACGCCGCCCCAG- 97610 Query 1549 TTATCGCCCCGCAGCACGAACTTAAAAC-CTATCCCTCCTGGGTGGGCGTTGACCTGTCA 1607 || |||||| | | | | ||| | | ||||| ||||| ||||||||| || | Sbjct 97609 CTAACGCCCCTGATGATG-AGTTACAGCATTATCCGGTTTGGGTTGGCGTTGACTTGGCC 97551 Query 1608 AACAAAATTGATATCTGTGCGGCCGCTAAA---GTCTGGCGGGCGCCAGATGGCCACGTT 1664 | ||||||||| || ||| | || |||| || || | || ||| ||| Sbjct 97550 AGTAAAATTGATGTCGCTGCAG-CGATAAAAATGTATGAAGACCGGCAGGGTAAAACGCA 97492 Query 1665 CATGCGGATTTCAAATTCTGGCTACCGGAAGGACGCCTTGAGAAATGTTCACG--CCAGA 1722 ||| | | ||| |||||| | || |||| ||| |||| | || | || || | Sbjct 97491 CAT--TAAATGCAAGTTCTGGTTGCCCGAAGATCGCATTGA-CACTGCAC-CGAAACACA 97436 Query 1723 TGGCAGAGCTCTATCGTAAGTGGGCCGGGATG--GACAAGCTGATCCTTACCGACGGTGA 1780 | |||||||| || || || ||||| ||||| | | || | ||||||||||| Sbjct 97435 TCGCAGAGCTTTACCGGAAATGGGC--GGATGCAGGTCACTTGGAATTGACCGACGGTGA 97378 Query 1781 TGTAATCGACCATGCTCAGATTAAGGAAGAGCTACAGCTGTGGGTTGCTGGCGA-GAGCC 1839 || || || |||| || || || || | | | |||| || |||||| || Sbjct 97377 AGTGATTGATCATGACATTATCAAAGATGACATCCTGAAGTGGTGTGATGGCGATGA--- 97321 Query 1840 TGAA--AGAAATTGGCTTCGACCCGTGGAGTGCGACGCAGTTCAGCCTTGCGCTGGCAGA 1897 || | ||| | || || ||||| |||||||| ||||| | | ||| || || Sbjct 97320 TGTACGTGAATTAGGGTTTGACCCATGGAGTGCAGTTCAGTTTTCTCGTCGGCTAGCGGA 97261 Query 1898 AGAAGGGTTGCCGCTGGTGGAAGTGCCGCAGACGGTTCGCAATTTCTCTGAGGCGATGAA 1957 ||||| | ||| | || || || | || || ||| || | ||||| || ||||| Sbjct 97260 GGAAGGCGTTCCGTTAGTTGAGGTCGCTCAAACAGTTAAGAACATGTCTGAAGCCATGAA 97201 Query 1958 AGAGGTCGAAGC-GCTG-GTATACGGTGGCCGCTTCCATCACAGCGATCAC---CCGGTG 2012 | || |||| | || |||| | || || ||||| ||||||| || || Sbjct 97200 AAGCGTTCAAGCTGATGTGTATTC--AGGTAAGTTTCATCA---CGATCACAATCCAATG 97146 Query 2013 ATGAACTGGATGATGTCCAACGTAACCGTCAAACCTGACCGGAACGAGAACATTTTCCCG 2072 ||| |||||| |||||||||| ||||| ||||| ||| | ||||| ||||| ||||| Sbjct 97145 ATGGCTTGGATGTTGTCCAACGTCACCGTAAAACCGGACAGAAACGAAAACATCTTCCCT 97086 Query 2073 AATAAGTCCACACCAGAGGCCAAAATTGATGGCCCTGCGGCCTTGTTCACAGCAATGAGC 2132 || || |||||||| || |||||| ||||| || | ||| |||| || |||| ||| Sbjct 97085 AACAAATCCACACCTGAAAACAAAATCGATGGTCCAGTTGCCATGTTTACCGCAAAAAGC 97026 Query 2133 CG 2134 || Sbjct 97025 CG 97024 Score = 95.1 bits (104), Expect = 3e-15 Identities = 77/92 (84%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 37503 AAGGACCGCCGCCTAGCCTCTTTTCACATCGCCGCAGGTTAGAAAACTTTTTTATGGGGT 37562 ||| |||||||||| ||| || | | |||||||||||||||||||||||||||||||| Sbjct 99247 AAGTACCGCCGCCTTACCTTTTGTTATATCGCCGCAGGTTAGAAAACTTTTTTATGGGGA 99188 Query 37563 CCCCCATTCGATGATTAATAGGAGTTTTCGAT 37594 ||||| || | ||||||||||| |||| || Sbjct 99187 TCCCCA-GCGTTAATTAATAGGAGGTTTCTAT 99157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120179955264642