Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq964 131 1e-25 seq1304 111 1e-19 seq1190 95.1 1e-14 >seq964 Length=291957 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || |||||||||||||||||||| ||||| || |||||||| Sbjct 215640 ATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTGGAGGTTGAACCTTCG 215699 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || |||||| |||||||| || | ||| ||||||| Sbjct 215700 GATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 215759 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | || || || || ||||| ||||||||| ||| | ||||||||||| Sbjct 215760 CAGCGTTTGATTTTCGCTGGTAAACAGTTGGAAGATGGCCGCACTTTATCCGATTATAAC 215819 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||||||||||| || ||| ||||||| | || || || || || Sbjct 215820 ATTCAAAAAGAATCTACCCTTCACTTGGTATTGCGTTTGCGTGGTGGTAT 215869 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 |||||||||||| || || || || ||||| || || ||||| ||| || ||||| Sbjct 215180 AAAAATGCAAATCTTCGTGAAGACTTTAACTGGCAAGACCATCACCCTTGAGGTCGAACC 215239 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 ||| || ||| | | || | ||| ||||| || || ||||| | ||| ||| Sbjct 215240 TTCGGATACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCAGA 215299 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||| | || || ||||| || |||||||||||||| ||| || ||||||| Sbjct 215300 TCAACAACGTCTAATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTA 215359 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| |||||||||||||||||||| ||| |||| || | || || || || || Sbjct 215360 TAATATTCAAAAAGAATCTACTCTCCACTTGGTTCTACGTTTGCGTGGTGGCAT 215413 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || ||||| || || |||||||| || ||| || ||||| Sbjct 215412 ATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAAGTTGAGCCTTCT 215471 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || |||| || |||||||| ||| | || |||||| Sbjct 215472 GATACTATTGAAAATGTTAAAGCTAAAATTCAA-GACAAAGAAGGAATCCCACCAGATCA 215530 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | || ||||| ||||||||||||||||| || || | |||||||| Sbjct 215531 ACAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAA 215590 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || |||||||||||||| |||| |||||||| | || || || || || Sbjct 215591 TATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGGCAT 215641 >seq1304 Length=336898 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 28548 GTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAA 28607 ||| | ||||| || || || ||||| ||||| ||||| ||||||||| ||| || Sbjct 274405 GTATAGATGCAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGAAGTTGAG 274346 Query 28608 CCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTA 28667 ||||| || || | | || ||||| |||||| |||||||| || | ||| | Sbjct 274345 CCTTCCGACACCATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCCCCA 274286 Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 |||||||| | | ||||| || || ||||||||||||||| | || || |||| Sbjct 274285 GATCAACAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGAC 274226 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTA 28763 || ||||| ||||| ||||| ||| | || ||||| Sbjct 274225 TACAACATCCAAAAGGAATCCACTTTACATTTGGTA 274190 >seq1190 Length=275307 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| ||||| |||||||||| ||||| || || || || || Sbjct 186672 AATGCAGATTTTTGTCAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAGCCGTC 186731 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | || |||| || || | || |||||||| ||| | || ||||| Sbjct 186732 CGACACTATTGAAAATGTCAAAGCCAAGATTCAG-GACAAAGAAGGAATTCCACCAGATC 186790 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 |||| | | || || || || ||||||||||||||| ||| | | ||||| | Sbjct 186791 AACAACGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGCCGTACTCTCTCTGATTACA 186850 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 | |||||||||||||| ||| ||||| ||||||| Sbjct 186851 ATATTCAAAAAGAATCCACTTTGCACTTGGTATT 186884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425395918744227