Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_020416.1 Length=160221 Score E Sequences producing significant alignments: (Bits) Value seq253 109 6e-19 >seq253 Length=360942 Score = 109 bits (120), Expect = 6e-19 Identities = 410/629 (65%), Gaps = 18/629 (3%) Strand=Plus/Plus Query 38126 ATATCGGGATACATTCGCTTAGAAGCGCATTCTAAAGCTAGTTGTTTGATATCATAATTT 38185 || ||||||||||| || || || || ||||| |||| |||||||||||||| || Sbjct 105012 ATGTCGGGATACATGCGTTTGCTCGCACACTCTAATGCTAACTGTTTGATATCATAGTTA 105071 Query 38186 GGGTCTTCACTATGAAGATTTAAACCTTCTTCAACGAACATA-ACCAATTTAGGAAAAAT 38244 || || || || |||| | |||| || || | || | || |||||||| |||| Sbjct 105072 GGATCACCATATTGGTGATTAAGGCCTTTTTTAA-TAGCAAACACTAATTTAGGGAAAAC 105130 Query 38245 TGGAGTAATTCCATGACGACCTAATCCTCGAATACGATTTTTAAGAATAGCTTGTTGAAT 38304 | ||| | | || |||||| || ||||| ||||| ||||| | |||||| || Sbjct 105131 GGCAGTTTTACGATTTTTACCTAACCCAGCGATACGGTTTTTTAGAATGGATTGTTGGAT 105190 Query 38305 TA---GTTTTTCTTCCCAAGATGTCCCCATACCAAATGTAATGGTAACGAAAGGTGTTTG 38361 | || ||||| | ||||| || | |||||| || ||| ||||| || ||||| Sbjct 105191 CAAGCGTGCTTCTTGC---GATGTGCCTAAACCAAACCCAAAGGTTACGAAGGGGGTTTG 105247 Query 38362 GCCGTTAGAACTGAAAAGAGTATTAACTTCATATTCATATCCTTGAAAAGCATCGAATAC 38421 || || | | || || || ||||| |||||| ||| || |||||| | || Sbjct 105248 ACCATTGGCGGTATGCAGTGTGTTCACTTCGTATTCAAGGGATTGGAAGGCATCGTA-AC 105306 Query 38422 A-TCTTTTTCTGTTTTTTCTTGAGCGTATAATTCAGCTTCTGGAATATGATATCGGCGAG 38480 | |||||||| |||| | ||| || || || ||| ||| | | | Sbjct 105307 ATTCTTTTTCGGTTTGGCTATCAGCATAGCCTTTCGCATCTTCAATGCCCCAATTGATCG 105366 Query 38481 CGTCTTCGATATGTTTGTTGAAAGTTGCT-TCTACATAAGGAGCTAGTACTTGGTCGA-- 38537 | || | |||||| || | || || | | ||||||||||| || | || || | Sbjct 105367 CTGTTTTTAGATGTTT-TTCATAGCTGATGTGGACATAAGGAGCAAGGATTTCATCAATG 105425 Query 38538 CATTAGCAAATGTAGTTCCACCATATTGATGAGAAGCTACTTGAGCTGTAATTTGAGCCA 38597 | | | | || || |||||||| ||| |||||||||||| ||||||| || Sbjct 105426 CGGTTG--ATGGTGGTGCCACCATAAATATGGCTAGCTACTTGAGCGATAATTTGGGCTG 105483 Query 38598 TTACGGCAGTTGCTACACCAATTGAATTTGATGTTTCAATTTCAGCATTACCGAGTTTAA 38657 | || || || || |||||| || | | || ||||| |||||||| | ||||| Sbjct 105484 TCACTGCGGTGGCAGTGGAAATTGATTTAGGAGGCTCTATTTCGGCATTACCCATTTTAA 105543 Query 38658 ACCCATTTTGAAGCATTCCGGCTAAATCTACTAAGCA-ACAGTTAGTAAACGGAAGCGAT 38716 ||||||| | ||| || | | ||| | | |||| ||||||| | || | || Sbjct 105544 ACCCATTAGTTAACATGCCTTCAAGATC-AATCAGCATACAGTTAAACATGGGGAAAAAT 105602 Query 38717 GGTGAATAATCCATGTCATGAAAATGGAT 38745 || | |||||| | || ||| |||| || Sbjct 105603 GGCGCATAATCGAGATCGTGATAATGAAT 105631 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 37460 TCAATTTTTTCGAATGGAGAAATTTTTTCTTCAACTGAAACATGGAAGCTATTAGTATAC 37519 ||||| || ||| |||| || || |||||| || ||||| ||||| || || Sbjct 104331 TCAATCTTATCGTATGGGTTAACGCGTTTTTCAACATCAAGGTGGAAACTATTGGTGTAG 104390 Query 37520 CATCCTTTGTCGGTTACACCTTTGACTATTCCATGTTCGGCTGCGTCAATTTTACAGAAA 37579 | ||||| || || ||||||| || | ||| || || | |||| ||||||| Sbjct 104391 TAACCTTTTTCCGTAACACCTTCGATAACCCCAAACTCAGCAGTATCAAGGCGACAGAAA 104450 Query 37580 CGATAACATAACGATTCTGCCGGGGTACTATAAAGGCTAAAAGCATATCCTGTTTCTTCT 37639 |||| ||| || ||| ||||| ||||||||||||||| |||| ||||||||| || Sbjct 104451 CGATCACACAAGTTTTCACTTGGGGTGCTATAAAGGCTAAAACCATAGCCTGTTTCTGCT 104510 Query 37640 GTCCATTC 37647 ||||||| Sbjct 104511 TTCCATTC 104518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512568224397880