Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_020848.1 Length=76705 Score E Sequences producing significant alignments: (Bits) Value seq410 143 1e-29 >seq410 Length=72445 Score = 143 bits (158), Expect = 1e-29 Identities = 480/740 (65%), Gaps = 28/740 (4%) Strand=Plus/Minus Query 57802 ATCCATGGAATGAAACCTTGTTGCTGTCCTGATACCTCAATACCTACTGACTGTGGTCGG 57861 ||||| ||||||||| |||||| |||| ||| || | ||| || |||||||| Sbjct 22789 ATCCAACTAATGAAACCACTTTGCTGACCTGTTACTTCTACACCAACAGACTGTGGGTTA 22730 Query 57862 TACATCTGTGCCAGTCTAAATAGATCATTTACGTTAGCATCCATCAGCTGCTTCTTAACA 57921 || || || ||||||| |||| |||||| | |||||| |||||| || ||||| | Sbjct 22729 TAAATTTGAACCAGTCTGAATAAATCATTAAGGTTAGCGTCCATCTCTTGTTTCTTGCAA 22670 Query 57922 ATACCGTCTACCCAGAACCAGTTACCGTGTGAGTCGTATGCCCAAACAGAAATAACAGAG 57981 ||||| |||||| || |||| ||||| || |||| || ||||||||| ||| ||| | Sbjct 22669 ATACCATCTACCAAGTACCAATTACCTTGATAGTCATACGCCCAAACAATAATGACACTG 22610 Query 57982 AAGTCAT---TGTGTTTCTCGGCACCTGTTGCAAAGTCGGTAGTGATATAGAAGTTGTAG 58038 ||||| | | ||| | | | ||||||| || || || || | | || Sbjct 22609 TAGTCAGCACTCTCTTTAGAAGAGACAG---CAAAGTCTGTGGTAATGTAATAATGATAA 22553 Query 58039 TCGTCCTTCTTCTCTAAGAGTGTGTTTCTCTT-GTACCA----ACTAATGTCAC----AG 58089 | ||| ||| |||| | || |||| | | || ||| | | Sbjct 22552 T---------TCTGTAACTGTGTCATGAGATTTGTACGAGAGTAATACTGTATCCATGAC 22502 Query 58090 TCGAGTATGAGACGATCCTCATCTGACATGATGCGAAGCATAAGTTCTTGGTTGAAAGTG 58149 || | || | | || ||||| || || || | ||||||||||||||| || | Sbjct 22501 TCTTGAATCATTCTCTCTTCATCAGAGGCAATACGTAACATAAGTTCTTGGTTAAATGAT 22442 Query 58150 TCCGCTTTACCAGTCTTGATCGCAATGTCGTACTGTTCTTTGACATAGTCGTATGTGAAA 58209 | | ||||| | | || | || ||||| || ||| | || || | ||| Sbjct 22441 TTAATTCGCCCAGTTCTCACAGCCAACTCATACTGGCTCTTAACAAATTCATACGAGAAT 22382 Query 58210 CGGTCAGGCCAAGACCCACGAAAGTCTTCTCTGGCGCAGGGGAACTGCTCACATACAGGG 58269 || |||||||| | ||| ||| || | | | || ||||| ||||||| | |||| Sbjct 22381 CGCTCAGGCCATGCACCAACAAATTCATGTTCTTCACAAGGGAAGCGCTCACAGATAGGG 22322 Query 58270 AAAACGTTAACCGCCCAAGCACCACTTTCGACTGCTTTATAAAGAGGATCTTTCGCGTTA 58329 |||||||||| |||| | || || || || | ||| ||| ||| ||| ||| Sbjct 22321 TAAACGTTAACGTACCAACCGCCTGACTCAACGGCCTCATATAGAACATCATTCTTATTA 22262 Query 58330 AAGGGAGTTCCAGACCAAATGATAATATTGTTTTTCGGATGAAGTGCATATGTCACCGCC 58389 || || || ||| | | || | || ||| | || | ||| |||| |||| | || Sbjct 22261 AAAGGCGTACCATTAAAGACAATCTTTTTCTTTGTTGGGTCAAGGGCATG-GTCAACACC 22203 Query 58390 -TTATAGATTGTTGCCTCTA-CGTTCTCAATAACTGTTGGAGACTTAGCATCTTCATCAG 58447 ||||| | || ||| | || | || || ||||| |||||||||||| || ||| Sbjct 22202 GTTATACACAGTGTCCTTAATCGCT-TCCATTTCTGTTTTAGACTTAGCATCCTCGTCAC 22144 Query 58448 AGAACAAGTCATCGAGTACCGCCAGCTGAGGACGTTTACCCATCTCTTTCGCACCACGCA 58507 | |||||||| ||||| ||||| |||||| ||||| | ||| |||||| | Sbjct 22143 TCACTAAGTCATCAAGTACAGCCAGGGTAGGACGCTTACCATACATTTTATTACCACGGA 22084 Query 58508 CACCTGTCTTTGCACCATAC 58527 ||||||||| |||||| || Sbjct 22083 TACCTGTCTTAGCACCAAAC 22064 Score = 104 bits (114), Expect = 1e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 46361 GCTACTGCCATAGGGTCAGGTTGAGGTTCGTAGTTACGTAAACGCTCTGCTAGTTCTGGC 46420 ||| || ||| |||||||| || |||| |||| |||||| | || || || ||| Sbjct 32138 GCTTCTTGCATTGGGTCAGGCTGTGGTTGGTAGGTACGTAGTTTGTGAGCAAGGTCAGGC 32079 Query 46421 ATCTTACGTAGATCTGCAATGTCAGCCATAATAGTATAGACCATCTTAGGGTCT---GTA 46477 || ||||| | |||||||| || |||| ||| || | | || | ||||| ||| Sbjct 32078 ATTTTACGCAATTCTGCAATATCTGCCAGAATGTTAAGGGCAATAGTCTGGTCTACGGTA 32019 Query 46478 TTAGGACCTACAGTCTGTAACATAAATGCTAGCTCTTGTGCTTTAGCGTTATCTTCTTCA 46537 ||| || | |||||||||||| ||||| || ||||||||||| |||||||||||| Sbjct 32018 TTA---CCCATAGTCTGTAACATGAATGCCAGTTCTTGTGCTTTCATGTTATCTTCTTCT 31962 Query 46538 GCAGTAGAAATATC 46551 || || | ||||| Sbjct 31961 GCCGTGGTGATATC 31948 Score = 104 bits (114), Expect = 1e-17 Identities = 214/311 (69%), Gaps = 22/311 (7%) Strand=Plus/Minus Query 43217 CACCTGCAAACATAACAACACCAGCACCGTTCAATAGGTCGATCTGAATCATGTCTTCAG 43276 |||| |||||||| | | ||||||||| | || | || || | | ||||||||||| Sbjct 34672 CACCAGCAAACATGATAGTACCAGCACCTTGTAACAACTCAATTTCGAGCATGTCTTCAG 34613 Query 43277 TGATTTCGTTAGCGCCACGAAGCATTTCGCGGTTAACG-TGCATTTCTAGTTCTTC---- 43331 |||||| || ||| | | || | ||| ||| ||||| | | ||| || Sbjct 34612 TGATTTG--TACCGC-----ACCTGTTACCAGTTCACGCTGCATATGT--TTCATCAGCA 34562 Query 43332 ----GTCAGTGTCGAAGTCTAGAGATTCTTGGTTGTACTCATCGAAGAAACCGAATTTCT 43387 |||||| || ||||| | ||| |||| | ||||| ||||| ||| | ||| Sbjct 34561 TCGGGTCAGTATCAAAGTCGATAGAGTCTTTAGTCCACTCACGGAAGATACCCATTTTAG 34502 Query 43388 CAATTGAACCTTCGATCTCGATACG-ACGGAAACCAACGCGGTTAACACGACCACCGTGC 43446 ||| ||||||| ||| || | ||| || | | ||||| ||||||||||||||||| | Sbjct 34501 AAATGGAACCTTTGATTTCCAGACGGACAGTA-CCAACACGGTTAACACGACCACCTTCT 34443 Query 43447 TCA-GAAAGAACAGGTAGTTTAGCAGCGATAGTACCAACGTCTTTGCTTGAACCGTAAAG 43505 ||| | | || || | |||| || ||| ||||||||||||| |||||||| | Sbjct 34442 TCACCCATGTAC-GGCATTTTATCAAGGATTTTACCAACGTCTTTAGAAGAACCGTATAA 34384 Query 43506 GTTACCAGCTT 43516 ||||||| ||| Sbjct 34383 GTTACCATCTT 34373 Score = 86.0 bits (94), Expect = 3e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 47769 TACGTACATACTCATCAATAAAGCTAACCTTATTAAGTAAGTAATTGAACTGGTGGTTTA 47828 |||||||||| ||||||||||| |||| ||||||| | || ||||||||||| | Sbjct 30658 TACGTACATAATCATCAATAAATTTAACTTTATTAATTTGCGTATCAAACTGGTGGTTCA 30599 Query 47829 GTAGTAAAGCATTCTGACGTGCTGCTTCCTTATCTTCATAAGTATAAGGAGTAACATTAA 47888 || || |||||| |||||| ||| || ||| ||| | || |||| ||| Sbjct 30598 ATAACAACATATTCTGGCGTGCTCTTTCTTTGGTTTCCCAAGACTTTGGCTTAACTGTAA 30539 Query 47889 AAATATCTGAAGTAGCAAGGAATGGTTCTGACAGAGCAGGGTATCTCCATTC 47940 | | ||| |||| || ||| || ||||||| |||||||| | |||||| Sbjct 30538 ATAAGTCTTGAGTACCATTGAAAGGCTCTGACAATGCAGGGTAACGCCATTC 30487 Score = 82.4 bits (90), Expect = 4e-11 Identities = 126/176 (72%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 46913 TTGAACTCATAGTCTTCACCATTAGCAAACTTACGTCGGTTAATAGTATCTAGCATATCC 46972 ||||||||| |||||| ||| | ||||||| || |||||| | ||| || | || Sbjct 31547 TTGAACTCAAAGTCTTGACCTTGTTCAAACTTGCGACGGTTAGTCACATCCAGTGCA-CC 31489 Query 46973 TTACGCATAC--CTGTTTGGCCATTAGCACTACGTGCCATGATATCAATCATTCCTCGTG 47030 || ||| || | ||||| ||| ||||| |||| | ||||||||||||||| | ||| Sbjct 31488 TTTGGCA-ACTGCAGTTTGACCACTAGCAGTACGACCAATGATATCAATCATTGCACGTT 31430 Query 47031 TAAGTGCTCCTTGAATCTTCTGGTTATCTAGAAGAAGTTCACCATCAGGCTGACCA 47086 ||||| || ||| || |||||| || |||||| ||||||| | |||| Sbjct 31429 CTAGTGCACCAGAAATACGTTGATTATCTGCAATAAGTTCTGCATCAGGTTCACCA 31374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 245326078174538