Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_020849.1 Length=76802 Score E Sequences producing significant alignments: (Bits) Value seq410 114 6e-21 >seq410 Length=72445 Score = 114 bits (126), Expect = 6e-21 Identities = 469/734 (64%), Gaps = 24/734 (3%) Strand=Plus/Minus Query 73480 ATCCAAGGAATAAAACCTCCTTGTTGTCCTGATACCTCAATACCTACTTGCTGAGGTCTA 73539 |||||| ||| ||||| | ||| || |||| ||| || | ||| || ||| || || Sbjct 22789 ATCCAACTAATGAAACCACTTTGCTGACCTGTTACTTCTACACCAACAGACTGTGGGTTA 22730 Query 73540 TACATCTGAGCCAGTCTAAATAGGTCATTAATATTTGCATCCATTAATTGCTTCTTAACG 73599 || || ||| ||||||| |||| ||||||| || || ||||| ||| ||||| Sbjct 22729 TAAATTTGAACCAGTCTGAATAAATCATTAAGGTTAGCGTCCATCTCTTGTTTCTTGCAA 22670 Query 73600 ATACCATCTACCCAGAACCACTCACCATTAGAGTTATATGCCCATACAGAAATAACAGAG 73659 |||||||||||| || |||| | ||| | | ||| ||| ||||| ||| ||| ||| | Sbjct 22669 ATACCATCTACCAAGTACCAATTACCTTGATAGTCATACGCCCAAACAATAATGACACTG 22610 Query 73660 AAGTCATTATGCTTTTCTGCTCCTGTAGCAAAGTCAGTTGTAATATAAAAGTTATATTGC 73719 ||||| | || || | ||||||||| || ||||| ||| | | ||| | | Sbjct 22609 TAGTCAGCACTCTCTTTAGAAGAGACAGCAAAGTCTGTGGTAATGTAATAATGATAATTC 22550 Query 73720 TCTCTCTTACTTAAGAGGGTGTTTCTTTTGTACCA----ACTAATGT---CA-CAGTCGT 73771 | | || | | ||| ||||||| | | || ||| || | || | Sbjct 22549 TGTAACTGTGTCATGAG--------ATTTGTACGAGAGTAATACTGTATCCATGACTCTT 22498 Query 73772 GTATGAGGCGATCCTCATCTGACATGATGCGAAGCATAAGCTCTTGGTTAAAAGTGTCTG 73831 | || | | || ||||| || || || | |||||| ||||||||||| | | Sbjct 22497 GAATCATTCTCTCTTCATCAGAGGCAATACGTAACATAAGTTCTTGGTTAAATGATTTAA 22438 Query 73832 CTTTACCGGTCTTGATCGCAATGTCGTACTGTTCTTTGACATAGTCGTATGTGAAACGGT 73891 | || || | | || | || ||||| || ||| | || || | ||| || | Sbjct 22437 TTCGCCCAGTTCTCACAGCCAACTCATACTGGCTCTTAACAAATTCATACGAGAATCGCT 22378 Query 73892 CAGGCCAAGACCCACGAAAGTCTTCTCTGGGGCAGGGGAACTGTTCACACACAGGGAAAA 73951 ||||||| | ||| ||| || | | || ||||| | ||||| | |||| ||| Sbjct 22377 CAGGCCATGCACCAACAAATTCATGTTCTTCACAAGGGAAGCGCTCACAGATAGGGTAAA 22318 Query 73952 CGTTAACCGCCCAAGCACCACTTTCAACTGCTTTATATAAGGGATCTTTCGCGTTAAAGG 74011 ||||||| |||| | || ||||| || | ||||| ||| ||| ||||| | Sbjct 22317 CGTTAACGTACCAACCGCCTGACTCAACGGCCTCATATAGAACATCATTCTTATTAAAAG 22258 Query 74012 GAGTTCCAGACCAAATGATAATATTGTTCT---TTGGATGAAGTGCATATGTAACTGCCT 74068 | || ||| || || ||| || |||| |||| | ||| |||| ||| | | Sbjct 22257 GCGTACCA---TTAAAGACAATCTTTTTCTTTGTTGGGTCAAGGGCATGGTCAACACCGT 22201 Query 74069 TATAAATTGTAGCCTCTA-CGTTCTCAATAACTGTAGGTGATTTAGCATCCTCATCTGAA 74127 |||| | || ||| | || | || || |||| || ||||||||||| || Sbjct 22200 TATACACAGTGTCCTTAATCGCT-TCCATTTCTGTTTTAGACTTAGCATCCTCGTCACTC 22142 Query 74128 AACAAGTCATCGAGTATTGCTAACTGAGGGCGTTTACCCATCTCTTTAGCACCACGAACA 74187 | |||||||| |||| || | ||| || ||||| | |||| |||||| | | Sbjct 22141 ACTAAGTCATCAAGTACAGCCAGGGTAGGACGCTTACCATACATTTTATTACCACGGATA 22082 Query 74188 CCTGTCTTGGCCCC 74201 |||||||| || || Sbjct 22081 CCTGTCTTAGCACC 22068 Score = 107 bits (118), Expect = 9e-19 Identities = 208/300 (69%), Gaps = 8/300 (3%) Strand=Plus/Minus Query 57645 CACCTGCAAACATAACTACACCAGCACCGTTCAATAGATCTGATTGGATCATGTCTTCAG 57704 |||| |||||||| | ||||||||| | || | || || || ||||||||||| Sbjct 34672 CACCAGCAAACATGATAGTACCAGCACCTTGTAACAACTCAATTTCGAGCATGTCTTCAG 34613 Query 57705 TGATTTCGTTAGCACCACGTAGCATTTCACGGTGTACGTGCATTTCTAGTTCTTCA--TC 57762 |||||| ||||| || || |||||| || | || |||| | || || Sbjct 34612 TGATTTGTACCGCACCTGTTACCAGTTCACGCTGCATATG--TTTCATCAGCATCGGGTC 34555 Query 57763 TGTATCGAAGTCTAGAGATTCTTGAGTGTACTCATCAAAGAAACCAAACTTCTCAATAGA 57822 ||||| ||||| | ||| |||| ||| ||||| |||| ||| | || ||| || Sbjct 34554 AGTATCAAAGTCGATAGAGTCTTTAGTCCACTCACGGAAGATACCCATTTTAGAAATGGA 34495 Query 57823 ACCTTCAATTTCAATACG-ACGGAAGCCAACGCGGTTAACACGACCACCATGCTCA-GAA 57880 ||||| ||||| | ||| || | | ||||| ||||||||||||||||| | ||| | Sbjct 34494 ACCTTTGATTTCCAGACGGACAGTA-CCAACACGGTTAACACGACCACCTTCTTCACCCA 34436 Query 57881 AGCACAGGAAGTTTAGCAGCGATAGTACCTACGTCTTTGCTTGAACCGTATAGGTTACCA 57940 | || || | |||| || ||| |||| |||||||| |||||||||| ||||||| Sbjct 34435 TGTAC-GGCATTTTATCAAGGATTTTACCAACGTCTTTAGAAGAACCGTATAAGTTACCA 34377 Score = 96.9 bits (106), Expect = 2e-15 Identities = 177/251 (71%), Gaps = 14/251 (6%) Strand=Plus/Minus Query 60887 GATTGAACTCATAATCTTCACCAGCTGCAAACTTACGACGGTTAATTACATCTAACATAT 60946 ||||||||||| | |||| ||| | ||||||| ||||||||| | ||||| | | Sbjct 31549 GATTGAACTCAAAGTCTTGACCTTGTTCAAACTTGCGACGGTTAGTCACATCCAGTGCAC 31490 Query 60947 CTTTACGCATAC--CAGTCTGACCATTAGCAGAGCGAGCCATGATATCAATCATTCCACG 61004 |||| ||| || |||| |||||| |||||| ||| | ||||||||||||||| |||| Sbjct 31489 CTTTG-GCA-ACTGCAGTTTGACCACTAGCAGTACGACCAATGATATCAATCATTGCACG 31432 Query 61005 AGTAAGTGCACCTTGAATCTTTTGGTTATCAATTAATAGTTCACCATCAGGTTGACCATA 61064 |||||||| ||| ||| ||||| | ||||| ||||||||| ||| | Sbjct 31431 TTCTAGTGCACCAGAAATACGTTGATTATCTGCAATAAGTTCTGCATCAGGTTCACC--A 31374 Query 61065 TAAAGATTTAC-GT-ACAGGTAAATACTGTGCAGACA---CAAAAGGATGCATACCATCA 61119 ||| | | | || ||||| | ||| ||||| | |||| || | |||||| Sbjct 31373 AAAACACTGCCAGTAACAGGCATATA---GGCAGAAACTTCAAACGGGAATTTTCCATCA 31317 Query 61120 GGATATGGATT 61130 ||||||||||| Sbjct 31316 GGATATGGATT 31306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 245636471694259