Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_020862.2 Length=74485 Score E Sequences producing significant alignments: (Bits) Value seq410 89.7 2e-13 seq613 87.8 9e-13 >seq410 Length=72445 Score = 89.7 bits (98), Expect = 2e-13 Identities = 193/287 (67%), Gaps = 9/287 (3%) Strand=Plus/Plus Query 35237 GTACCCTGATAAGTCAAAGCAAAGGTAGGAGCTTTAGAATCCTGCCTGTGCTGCTTA--- 35293 |||||| |||||| ||||| || ||||| | ||| ||| || | ||| | | Sbjct 61617 GTACCCAAATAAGTTAAAGCGAATGTAGGTGACTTACTATCTTGTC---GCTCATCAGGG 61673 Query 35294 TACTTCTTCGCAATGCTGTTAATTGAATCTACCGAAGTAGGGTCAATATCTGGCATGTGT 35353 || || | || || |||||||| |||||| ||| ||||||||||||| | Sbjct 61674 TATTTGTCAGCGATACTGTTAATACTATCTAC---AGTTTCAACAATATCTGGCATACGG 61730 Query 35354 TCCCCAAAGTACCCGTGTGCTCGTAGACAGTGACCATCATAACCATCGGTGTAGACCTTT 35413 || ||||| | || || | |||||| |||||||||||||| || || ||||| Sbjct 61731 TCTTTGAAGTAATAGAAAGCACGCAAACAGTGTCCATCATAACCATCTGTATACACCTTA 61790 Query 35414 AGTTTTTCAGGATCACGAGTCGTCAAAGCTGAGATACGATCCTCTAGGGAATCAAAATCC 35473 ||||| | ||| || ||| || ||||| || || | || || || |||||| || Sbjct 61791 AGTTTATTAGGGTCTTTAGTGGTTAAAGCGGATATTCTGTCTTCAAGACTATCAAAGTCT 61850 Query 35474 AGACCAACAAATAACCATCCAGAAGGTGCTTCAAAGCATTGCTTGAT 35520 || ||| ||| | ||| || |||||| |||||| | ||||| Sbjct 61851 AGTCCAGTAAACAGCCAGCCTTTCGGTGCTCTAAAGCAACGTTTGAT 61897 Score = 82.4 bits (90), Expect = 4e-11 Identities = 107/147 (73%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 36247 GTTATATTTCAACAGCT---TAGGCAGAGGAATTAATGTGATATCTTTGATATCTTCCAC 36303 |||||||| ||| | || |||| ||| |||| ||||||| ||||||||||| || Sbjct 62585 GTTATATTCCAATAACTCTTTAGG---AGGTATTAGATTGATATCATTGATATCTTCTAC 62641 Query 36304 TGCATAGTTACCTGCAAACTCTTGAGCCTGAACCTTCAAACCAAGCTGATTACCTGCACA 36363 |||||||||||||||||||| || | | | | || ||||| | || || || ||| Sbjct 62642 AGCATAGTTACCTGCAAACTCGTGTGAGTTAGCTTTTAAACCTAAATGGTTTTGTGAACA 62701 Query 36364 TGAGTTTGTAGCTAGGTATGTGATAAT 36390 ||| || |||| |||||||| || Sbjct 62702 GTTGTTGGTCGCTAAATATGTGATGAT 62728 >seq613 Length=31296 Score = 87.8 bits (96), Expect = 9e-13 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 70192 ATGGTGCCGCCACAAAGAATTGAACTCTGGACATCCTGTTTACAAGGCAGGCGCTCTACC 70251 ||||||||| ||| |||| | |||||| |||| | ||| ||||||| ||| |||||||| Sbjct 3945 ATGGTGCCGGCACCAAGAGTCGAACTCGGGACCTACTGATTACAAGTCAGTTGCTCTACC 3886 Query 70252 AACTGAGCTATAGCGGCATCA 70272 ||||||||||| |||||||| Sbjct 3885 AACTGAGCTATGCCGGCATCA 3865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238222226486078