Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_020868.1 Length=76718 Score E Sequences producing significant alignments: (Bits) Value seq410 143 1e-29 >seq410 Length=72445 Score = 143 bits (158), Expect = 1e-29 Identities = 480/740 (65%), Gaps = 28/740 (4%) Strand=Plus/Plus Query 24878 GTATGGTGCAAAGACAGGTGTGCGTGGTGCGAAAGAGATGGGTAAACGTCCTCAGCTGGC 24937 || |||||| ||||||||| | |||||| ||| | ||||| |||||| ||||| Sbjct 22064 GTTTGGTGCTAAGACAGGTATCCGTGGTAATAAAATGTATGGTAAGCGTCCTACCCTGGC 22123 Query 24938 GGTACTCGATGACTTGTTCTCTGATGAAGATGCTAAGTCTCCAACAGTTATTGAGAACG- 24996 ||||| |||||||| | ||| || |||||||||||| ||||| || || | || Sbjct 22124 TGTACTTGATGACTTAGTGAGTGACGAGGATGCTAAGTCTAAAACAGAAATGGA-AGCGA 22182 Query 24997 TAGAGGCAACAATCTATAA-GGCGGTGACATATGCACTTCATCCGAAAAACAATATTATC 25055 | ||| || | ||||| || | |||| |||| ||| | || | ||| || | || Sbjct 22183 TTAAGGACACTGTGTATAACGGTGTTGAC-CATGCCCTTGACCCAACAAAGAAAAAGATT 22241 Query 25056 ATTTGGTCTGGAACTCCCTTTAACGCGAAAGATCCTCTTTATAAAGCAGTCGAAAGTGGT 25115 | | ||| || || ||||| ||| ||| ||| ||| | || || || || Sbjct 22242 GTCTTTAATGGTACGCCTTTTAATAAGAATGATGTTCTATATGAGGCCGTTGAGTCAGGC 22301 Query 25116 GCTTGGGCGGTTAACGTTTTCCCTGTATGTGAGCAGTTCCCCTGCGCCAGAGAAGACTTT 25175 | |||| |||||||||| |||| | ||||||| ||||| || | | | || ||| Sbjct 22302 GGTTGGTACGTTAACGTTTACCCTATCTGTGAGCGCTTCCCTTGTGAAGAACATGAATTT 22361 Query 25176 CGTGGGTCTTGGCCTGACCGTTTCACATACGACTATGTCAAAGAACAGTACGACATTGCG 25235 ||| | |||||||| || ||| | || || | ||| || ||||| || | || Sbjct 22362 GTTGGTGCATGGCCTGAGCGATTCTCGTATGAATTTGTTAAGAGCCAGTATGAGTTGGCT 22421 Query 25236 ATCAAGACTGGTAAAGCGGACACTTTCAACCAAGAACTTATGCTTCGCATCATGTCAGAT 25295 | | ||||| | | | || ||||||||||||||| | || || || ||| Sbjct 22422 GTGAGAACTGGGCGAATTAAATCATTTAACCAAGAACTTATGTTACGTATTGCCTCTGAT 22481 Query 25296 GAGGATCGTCTCATACTCGACT----GTGACATTAGT----TGGTAC-AAGAGAAACACA 25346 || || | | || | || | | ||| || | | |||| || | ||| Sbjct 22482 GAAGAGAGAATGATTCAAGAGTCATGGATACAGTATTACTCTCGTACAAATCTCATGACA 22541 Query 25347 CTCTTAGAGAAGAAGGACGACTACAACTTCTATATCACTACCGACTTTGCAACAGGTGCC 25406 | ||| ||| | || | | || || || || ||||||| | | | Sbjct 22542 CAGTTACAGA---------ATTATCATTATTACATTACCACAGACTTTG---CTGTCTCT 22589 Query 25407 GAGAAACACA---ATGACTTCTCTGTTATTTCTGTTTGGGCATACGACTCACACGGTAAC 25463 ||| | | ||||| | ||| ||| ||||||||| || |||| || ||||| Sbjct 22590 TCTAAAGAGAGTGCTGACTACAGTGTCATTATTGTTTGGGCGTATGACTATCAAGGTAAT 22649 Query 25464 TGGTTCTGGGTAGACGGTATTGTTAAGAAGCAGCTGATGGATGCTAACGTAAATGATCTA 25523 |||| || |||||| |||||| ||||| || |||||| |||||| | |||||| || Sbjct 22650 TGGTACTTGGTAGATGGTATTTGCAAGAAACAAGAGATGGACGCTAACCTTAATGATTTA 22709 Query 25524 TTTAGACTGGCACAGATGTACCGACCACAGTCAGTAGGTATTGAGGTATCAGGACAGCAA 25583 || ||||||| || || || |||||||| || ||| | || ||| |||| |||||| Sbjct 22710 TTCAGACTGGTTCAAATTTATAACCCACAGTCTGTTGGTGTAGAAGTAACAGGTCAGCAA 22769 Query 25584 CAAGGTTTCATTCCATGGAT 25603 ||||||||| ||||| Sbjct 22770 AGTGGTTTCATTAGTTGGAT 22789 Score = 104 bits (114), Expect = 1e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 36875 GATATTTCTACTGCTGAAGAAGATAACGCTAAAGCACAAGAGCTAGCATTTATGTTACAG 36934 ||||| | || || |||||||||||| ||||||||||| || ||||| ||||||||| Sbjct 31948 GATATCACCACGGCAGAAGAAGATAACATGAAAGCACAAGAACTGGCATTCATGTTACAG 32007 Query 36935 ACTGTAGGTCCTAATAC---AGACCCTAAGATGGTCTATACTATTATGGCTGACATTGCA 36991 ||| | || |||||| ||||| | || | | || ||| |||| || |||||| Sbjct 32008 ACTATGGG---TAATACCGTAGACCAGACTATTGCCCTTAACATTCTGGCAGATATTGCA 32064 Query 36992 GATCTACGTAAGATGCCAGAACTAGCAGAGCGTTTACGTAACTACGAACCTCAACCTGAC 37051 || | ||||| ||||| || || || | |||||| |||| |||| || |||||| Sbjct 32065 GAATTGCGTAAAATGCCTGACCTTGCTCACAAACTACGTACCTACCAACCACAGCCTGAC 32124 Query 37052 CCTATGGCAGTAGC 37065 || ||| || ||| Sbjct 32125 CCAATGCAAGAAGC 32138 Score = 104 bits (114), Expect = 1e-17 Identities = 214/311 (69%), Gaps = 22/311 (7%) Strand=Plus/Plus Query 39910 AAGCTGGTAACCTTTACGGTTCAAGCAAAGACGTTGGTACTATCGCTGCTAAACTACCTG 39969 ||| ||||||| | |||||||| ||||||||||||| ||| || |||| | || | Sbjct 34373 AAGATGGTAACTTATACGGTTCTTCTAAAGACGTTGGTAAAATCCTTGATAAAATGCC-G 34431 Query 39970 TTCTTTC-TGAGCACGGTGGTCGTGTTAACCGCGTTGGTTTCCGT-CGTATCGAGATCGA 40027 | | | ||| | ||||||||||||||||| ||||| | | || ||| | || ||| | Sbjct 34432 TACATGGGTGAAGAAGGTGGTCGTGTTAACCGTGTTGG-TACTGTCCGTCTGGAAATCAA 34490 Query 40028 AGGTTCAATTGAGAAATTCGGTTTCTTCGATGAGTACAACCAAGAATCTCTAGACTTCGA 40087 |||||| ||| ||| | ||| ||||| ||||| | |||| ||| | ||||| || Sbjct 34491 AGGTTCCATTTCTAAAATGGGTATCTTCCGTGAGTGGACTAAAGACTCTATCGACTTTGA 34550 Query 40088 CACTGAC--------GAAGAACTAGAAATGCA-CGTTAACCGCGAAATGCTTCGTGGCGC 40138 |||||| || ||| | | ||||| ||| ||| | || | | ||| Sbjct 34551 TACTGACCCGATGCTGATGAA--ACATATGCAGCGTGAACTGGTAACAGGT-----GCGG 34603 Query 40139 TAACGAAATCACTGAAGACATGATTCAGATCGACCTATTGAACGGTGCTGGTGTTGTTAT 40198 || ||||||||||||||||| | | || || | || | ||||||||| | | || Sbjct 34604 TA--CAAATCACTGAAGACATGCTCGAAATTGAGTTGTTACAAGGTGCTGGTACTATCAT 34661 Query 40199 GTTTGCAGGTG 40209 |||||| |||| Sbjct 34662 GTTTGCTGGTG 34672 Score = 86.0 bits (94), Expect = 3e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 35486 GAATGGAGATACCCTGCTCTGTCAGAACCATTCCTTGCTACTTCAGATATTTTTAATGTT 35545 |||||| | |||||||| ||||||| || ||| || |||| ||| | |||| ||| Sbjct 30487 GAATGGCGTTACCCTGCATTGTCAGAGCCTTTCAATGGTACTCAAGACTTATTTACAGTT 30546 Query 35546 ACTCCTTATACTTATGAAGATAAGGAAGCAGCACGTCAGAATGCTTTACTACTAAACCAC 35605 | || | ||| ||| || ||| |||||| |||||| || || | |||||| Sbjct 30547 AAGCCAAAGTCTTGGGAAACCAAAGAAAGAGCACGCCAGAATATGTTGTTATTGAACCAC 30606 Query 35606 CAGTTCAATTACTTACTTAATAAGGTTAGCTTTATTGATGAGTATGTACGTA 35657 ||||| || | ||||||| |||| ||||||||||| |||||||||| Sbjct 30607 CAGTTTGATACGCAAATTAATAAAGTTAAATTTATTGATGATTATGTACGTA 30658 Score = 82.4 bits (90), Expect = 4e-11 Identities = 126/176 (72%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 36340 TGGTCAGCCTGATGGTGAACTTCTTCTAGATAACCAGAAGATTCAAGGAGCACTTACACG 36399 |||| | ||||||| |||||| || |||||| || ||| || ||||| ||| Sbjct 31374 TGGTGAACCTGATGCAGAACTTATTGCAGATAATCAACGTATTTCTGGTGCACTAGAACG 31433 Query 36400 AGGAATGATTGATATCATGGCACGTAGTGCTAATGGCCAAACAG--GTATGCGTAAGGAT 36457 | ||||||||||||||| | |||| ||||| ||| ||||| | || ||| |||| | Sbjct 31434 TGCAATGATTGATATCATTGGTCGTACTGCTAGTGGTCAAACTGCAGT-TGCCAAAGG-T 31491 Query 36458 ATGCTAGATACTATTAACCGACGTAAGTTTGCTAATGGTGAAGACTATGAGTTCAA 36513 || ||| | |||||| || ||||||| | ||| |||||| ||||||||| Sbjct 31492 GCACTGGATGTGACTAACCGTCGCAAGTTTGAACAAGGTCAAGACTTTGAGTTCAA 31547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 245367677306047