Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq964 167 4e-36 seq1190 138 2e-27 >seq964 Length=291957 Score = 167 bits (184), Expect = 4e-36 Identities = 179/237 (76%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | ||| || | ||||| ||||||||||| ||||| ||||| Sbjct 215648 AATTTGCATGCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATT 215589 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || || || || | || || |||||||| || |||||||| || | ||||| Sbjct 215588 ATAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTG 215529 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || ||||||||||| ||||| ||||| | ||| | |||| ||||||||| || Sbjct 215528 ATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGA 215469 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||||||| | ||| || ||||| || || | || || ||||| |||||||| Sbjct 215468 AGGCTCAACTTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCAT 215412 Score = 129 bits (142), Expect = 1e-24 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | ||| || || |||| || | |||| ||||| ||||||| Sbjct 215419 ATTTGCATGCCACCACGCAAACGTAGAACCAAGTGGAGAGTAGATTCTTTTTGAATATTA 215360 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||||| || || | || || |||||||| ||||||||||||| | |||||| Sbjct 215359 TAATCGGACAAAGTGCGTCCGTCTTCCAATTGTTTACCGGCAAAAATTAGACGTTGTTGA 215300 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || |||||||| ||||| | || | |||| ||| ||||| ||| Sbjct 215299 TCTGGGGGAATACCCTCCTTATCTTGAATTTTAGCCTTAACATTTTCAATCGTATCCGAA 215240 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | || || || || || || || || || |||| || || || || ||||||||||| Sbjct 215239 GGTTCGACCTCAAGGGTGATGGTCTTGCCAGTTAAAGTCTTCACGAAGATTTGCATTTT 215181 >seq1190 Length=275307 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || | ||||| ||||| || | ||||| |||||| || || || Sbjct 186900 ACCACCACGAAGGCGCAATACCAAGTGCAAAGTGGATTCTTTTTGAATATTGTAATCAGA 186841 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | ||| || ||||||||||| || ||||| || | |||||||| || || Sbjct 186840 GAGAGTACGGCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGG 186781 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||||||||||| || || || |||| ||| | |||| |||||| ||||| | ||| || Sbjct 186780 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATAGTGTCGGACGGCTCGAC 186721 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || || ||||| ||||| ||||| ||||| || |||||| Sbjct 186720 CTCAAGAGTGATGGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCATT 186672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899635136150160