Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq869 163 4e-35 seq964 141 1e-28 seq583 84.2 3e-11 >seq869 Length=1271022 Score = 163 bits (180), Expect = 4e-35 Identities = 358/534 (67%), Gaps = 4/534 (1%) Strand=Plus/Minus Query 18161 GCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCG 18220 ||||||||| |||||||| ||||| | ||||| || || || || || | || Sbjct 483970 GCAAAATCACAATGTAAACCCTCATCACGTGATATCAACTCATTGGAGAATGTAAGACCA 483911 Query 18221 GGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATA 18280 ||||| | ||| | ||| ||||||||||| || || || ||||| | | |||||| ||| Sbjct 483910 GGCATAAGACCACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTAAAGAAAATA 483851 Query 18281 CCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTA- 18338 ||||| || ||| || || || || | | |||| ||||| | | | ||| | || | Sbjct 483850 CCCTCTACAGCA-GCAAAAGCAATAATACGTTCACCAAAATT-TGCTGATTTCGAAGAAA 483793 Query 18339 TCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAA 18398 |||| |||||| || | | | | || ||| | || |||||||||| Sbjct 483792 TCCAAGCCATTGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAA 483733 Query 18399 ACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTT 18458 | | || ||| | || ||| || |||||| | || |||| | | |||||||| Sbjct 483732 AGAGATAATCACGCTGTTCACGATCCTTAATATAACTATCAATTAGAATACTATACATTT 483673 Query 18459 CAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATT 18518 |||| |||| ||||||| || || ||||| | ||| || | | ||||| | | || Sbjct 483672 CAGAGTGTACATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCTCTGTAACTT 483613 Query 18519 GAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGA 18578 | | || | | || | ||| || | ||| ||||| || || || || | || |||| Sbjct 483612 GTACTTCTTGAGAGAAACGTTCGACAAGATTTTCATTGACAATGCCATCGGAAGCGGCGA 483553 Query 18579 AAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCAT 18638 | || || | ||||| | ||||||||| ||||| || |||| | | ||| || Sbjct 483552 AGAAAGCAAGAACATGTGAAATGAAATGACGCTCATTGTCGGTGAGTCTTTCCCAGTCGG 483493 Query 18639 CTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 ||||||| || ||||| |||||||| ||||||||||| | |||||||| Sbjct 483492 AGTTATCTTTAGAAAGATCTACTTCTTCTACCGTCCAAAAAGAAGCTTCGGCCT 483439 >seq964 Length=291957 Score = 141 bits (156), Expect = 1e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| ||||||||||| ||||| || || || ||||| || |||| Sbjct 215412 ATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAAGTTGAGCCTTCT 215471 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| |||||| ||||| |||||||| || || ||||| ||| Sbjct 215472 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAA 215531 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| ||| || || || | ||||| | || || || ||||||||| Sbjct 215532 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAAT 215591 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 ||| ||||| | || | ||||| || ||| Sbjct 215592 ATACAAAAAGAATCTACATTGCATTTGGTATTA 215624 Score = 104 bits (114), Expect = 3e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || | || || || ||||| || || || || | || |||||| | Sbjct 215181 AAAATGCAAATCTTCGTGAAGACTTTAACTGGCAAGACCATCACCCTTGAGGTCGAACCT 215240 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| ||| ||| || || |||||| |||||||| || || || || ||||| Sbjct 215241 TCGGATACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCAGAT 215300 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | | |||| ||||||||| || | ||||| | ||||| || |||||| Sbjct 215301 CAACAACGTCTAATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTAT 215360 Query 156000 AATAT 156004 ||||| Sbjct 215361 AATAT 215365 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || ||||||| || || || ||||||||||| || ||||| ||| ||| Sbjct 215868 ATGCAAATTTTCGTTAAAACTTTAACCGGCAAAACTATTACCTTGGAAGTTGAACCTTCC 215927 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || || || || ||||| ||||| || || ||||| ||| Sbjct 215928 GACACTATTGAGAATGTTAAGGCCAAGATCCAGGATAAGGAAGGTATTCCCCCAGATCAA 215987 Query 155943 CAAAGATTGAT 155953 ||| | ||||| Sbjct 215988 CAACGTTTGAT 215998 >seq583 Length=2816 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 ||| || ||||||||||| | ||| ||||||||||| || | || ||||| || ||||| Sbjct 326 ACAAGCGAAATCAGTGTGCATACCCTCATCTCTGGAAATAAGCTCATTACTGAATGTTAA 267 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276 || ||||| | || | || || | ||| || || | ||||| || | ||||| Sbjct 266 ACCAGGCATCAAGCCACGCTTCTTCAACCAGAAAATGGCAGCGAATGAACCACTGAAGAA 207 Query 18277 TATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGC 18315 | |||||| || ||| ||||| || | |||||| ||||| Sbjct 206 GACACCCTCGACAGCA-GCGAAAGCGACTAATCTCTCAGC 168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731856328790800