Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq964 181 2e-40 seq869 167 5e-36 seq1304 154 3e-32 seq1190 147 4e-30 >seq964 Length=291957 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | | ||||||||| ||||| || |||| ||||| |||||||||||| Sbjct 215641 ATGCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCA 215582 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || | || ||||||||||| |||||||| || || | |||||||| ||| Sbjct 215581 GACAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGT 215522 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| |||||| ||| ||||| |||| ||| || | || Sbjct 215521 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCA 215462 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAt 192536 ||||| | ||| |||||||| ||||| ||||| |||| ||| || ||||| Sbjct 215461 ACTTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCAT 215412 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | | ||| ||||| || || | |||| ||||| || |||||||| Sbjct 215869 ATACCACCACGCAAACGCAATACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCG 215810 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || || |||| ||||| ||||||||||| || || || | ||||||||| || Sbjct 215809 GATAAAGTGCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGG 215750 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| |||||| ||| ||||| ||||| ||| || | ||| Sbjct 215749 GGAATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCA 215690 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAt 192536 || || | ||||| |||||||| ||||||||||||| || || ||||| Sbjct 215689 ACCTCCAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCAT 215640 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| ||||||||||| | ||||| || || ||| || ||||| Sbjct 216884 ATACCACCACGGAGACGCAATACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCC 216825 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| |||||||||||||| |||||||| || | ||||| || || Sbjct 216824 GAAAGGGTGCGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGGTCTGGG 216765 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || ||| || || || || | ||| || | ||| Sbjct 216764 GGAATACCTTCCTTATCTTGGATCTTAGCCTTGACGTTTTCAATGGTATCGGAAGGTTCA 216705 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAt 192536 ||||| | ||| |||||||| || || || ||||| | || |||||||| Sbjct 216704 ACTTCCAAAGTGATGGTTTTTCCGGTCAAAGTTTTCACGAAGATCTGCAT 216655 Score = 132 bits (146), Expect = 9e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | | ||||| || || || | ||||| ||||| ||||||||||| Sbjct 215413 ATGCCACCACGCAAACGTAGAACCAAGTGGAGAGTAGATTCTTTTTGAATATTATAATCG 215354 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || ||| | || |||||||||||||| ||||| |||| | |||||||| || Sbjct 215353 GACAAAGTGCGTCCGTCTTCCAATTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGG 215294 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| |||||| || ||||| || | ||| || | ||| Sbjct 215293 GGAATACCCTCCTTATCTTGAATTTTAGCCTTAACATTTTCAATCGTATCCGAAGGTTCG 215234 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAtttt 192539 || || || || ||||| || |||||||| || || | || || |||||||| Sbjct 215233 ACCTCAAGGGTGATGGTCTTGCCAGTTAAAGTCTTCACGAAGATTTGCATTTT 215181 >seq869 Length=1271022 Score = 167 bits (184), Expect = 5e-36 Identities = 469/712 (66%), Gaps = 25/712 (4%) Strand=Plus/Minus Query 49655 ATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTTAAA 49714 |||||| |||||||| | ||||| |||||||||| ||||||||| || | || || | Sbjct 484139 ATCGGCCACAAATTCTATATATTCCGACATTAATTTACAATTCATGCCTATCAAATTGAC 484080 Query 49715 TGGTAATGCATCATCAATAAATTCtttttctatttctacagctt--gtt-taattatcat 49771 || || ||||| || ||||| | ||| |||| || |||| || ||||| || Sbjct 484079 GGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCGCTTCAGTGATAATTTCAAT 484020 Query 49772 aattatattattttttgataatttatatttaatatgattcgcatatattaa-ACATGCAA 49830 |||| | | | || | || || ||| | || | | ||||| ||| |||| Sbjct 484019 AATTCTCTC-TCGACTGGGACGTTGTACCAAATGT--TT---AAACATTAATACA-GCAA 483967 Query 49831 AATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCA 49890 ||||| |||||||||||| || | ||||| || ||||| || || | || |||| Sbjct 483966 AATCACAATGTAAACCCTCATCACGTGATATCAACTCATTGGAGAATGTAAGACCAGGCA 483907 Query 49891 TTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCT 49950 | | || | || || |||||||| || || |||||||| | | |||||| ||||||| Sbjct 483906 TAAGACCACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTAAAGAAAATACCCT 483847 Query 49951 CGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATA--TCCA 50008 | ||| ||||| || || || | | | ||||| ||| | || || || | |||| Sbjct 483846 CTACAGCAGCAAAAGCAATAATACGTTCACCAAA-ATTTGCTGATT-TCGAAGAAATCCA 483789 Query 50009 ATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATA- 50067 | || |||||||| || || || | || || ||| |||| ||||| ||||| | Sbjct 483788 AGCCATTGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAAGAG 483729 Query 50068 --ATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTC 50125 | ||| | |||| |||| | | ||||||||| Sbjct 483728 ATAATCACGCTGTTCA---CGATCCTTAATATAACTATCAATTAGAATACTATACATTTC 483672 Query 50126 AGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTG 50185 ||| |||||| |||||| || |||||||| ||| || | ||| |||| | || Sbjct 483671 AGAGTGTACATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCTCTGTAACTTG 483612 Query 50186 AACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAA 50245 ||||| | |||| ||||| || | ||| ||| ||||| ||||| || || ||||| Sbjct 483611 TACTTCTTGAGAGAAACGTTCGACAAGATTTTCATTGACAATGCCATCGGAAGCGGCGAA 483552 Query 50246 GAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTC 50305 ||| || | ||| | | ||| ||||| ||||| || | | ||||||| | Sbjct 483551 GAAAGCAAGAACATGTGAAATGAAATGACGCTCATTGTCGGTGAGTCTTTCCCA--GTCG 483494 Query 50306 AAG--ATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGG 50355 || ||| || || | |||||||||||||| |||||||| || ||| ||| Sbjct 483493 GAGTTATCTTTAGAAAGATCTACTTCTTCTACCGTCCAAAAAGAAGCTTCGG 483442 >seq1304 Length=336898 Score = 154 bits (170), Expect = 3e-32 Identities = 177/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| |||||||| | |||||| | ||| ||||||||||| | || || ||| | Sbjct 274162 GTTCAATGATACCACCACGAAGACGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGT 274221 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || || || || || || |||| ||||||||||||||||| ||||| || | |||| Sbjct 274222 TGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTT 274281 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 |||| || || || |||||||| ||||| ||||| || ||||| || | || | Sbjct 274282 GATCTGGGGGGATACCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATGGTGTCGG 274341 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAt 192536 | | || ||||| | |||||||| ||||||||||| ||||| | || |||||||| Sbjct 274342 AAGGCTCAACTTCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 274399 >seq1190 Length=275307 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || ||||| || || ||||| | ||||| ||||| |||||||| Sbjct 186900 ACCACCACGAAGGCGCAATACCAAGTGCAAAGTGGATTCTTTTTGAATATTGTAATCAGA 186841 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| ||||||||||| ||||| || || || | |||||||| ||||| Sbjct 186840 GAGAGTACGGCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGG 186781 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||||| || || || || ||| ||||| |||| || |||| || || Sbjct 186780 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATAGTGTCGGACGGCTCGAC 186721 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAtt 192537 || ||||| ||||| ||||| |||| ||||| | ||| ||||||||| Sbjct 186720 CTCAAGAGTGATGGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCATT 186672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984458392817550