Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq964 167 4e-36 seq869 147 4e-30 seq1190 143 5e-29 seq1304 132 9e-26 >seq964 Length=291957 Score = 167 bits (184), Expect = 4e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 |||||||| ||||| || |||| ||||| ||||||||||| || || | || || Sbjct 215626 CGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGACAATGTGCGCCCG 215567 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||||||||| ||||||||||| || | ||||| || ||||| ||||||||||| Sbjct 215566 TCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTG 215507 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| |||||| ||| ||||| |||||||| || | || ||||| | ||| ||| Sbjct 215506 TCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCAACTTCCAAAGTGATG 215447 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| ||||| |||| || || ||||| Sbjct 215446 GTTTTGCCAGTCAATGTCTTAACAAAGATTTGCAT 215412 Score = 167 bits (184), Expect = 4e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | | || ||||| || || | |||| ||||| ||| |||||||| Sbjct 215869 ATACCACCACGCAAACGCAATACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCG 215810 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| || | || ||||| ||||||||||| ||||| || | |||||| || || Sbjct 215809 GATAAAGTGCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGG 215750 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| |||||| ||| ||||| ||||||||| || | ||| Sbjct 215749 GGAATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCA 215690 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||||| |||||||| ||||||||||||| ||| || ||||| Sbjct 215689 ACCTCCAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCAT 215640 Score = 147 bits (162), Expect = 4e-30 Identities = 167/223 (75%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 |||| || || || | ||||| ||||| |||||||||||| || |||| ||| || Sbjct 215398 CGTAGAACCAAGTGGAGAGTAGATTCTTTTTGAATATTATAATCGGACAAAGTGCGTCCG 215339 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||||||||||||| |||||||||| | ||||| || || || || || || ||| Sbjct 215338 TCTTCCAATTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCCTTA 215279 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| |||||| || ||||| || ||||| || | ||| || || || || ||| Sbjct 215278 TCTTGAATTTTAGCCTTAACATTTTCAATCGTATCCGAAGGTTCGACCTCAAGGGTGATG 215219 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTAT 172077 || || |||||||| || || | ||| || |||||||| |||| Sbjct 215218 GTCTTGCCAGTTAAAGTCTTCACGAAGATTTGCATTTT-TTAT 215177 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || ||||||||||| | ||||| || || || || ||||| Sbjct 216884 ATACCACCACGGAGACGCAATACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCC 216825 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || |||||||||||||| ||||| || || | |||||||| || Sbjct 216824 GAAAGGGTGCGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGGTCTGGG 216765 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || ||| || || || || ||||| || | ||| Sbjct 216764 GGAATACCTTCCTTATCTTGGATCTTAGCCTTGACGTTTTCAATGGTATCGGAAGGTTCA 216705 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| |||||||| || || || ||||| | ||| |||||||| Sbjct 216704 ACTTCCAAAGTGATGGTTTTTCCGGTCAAAGTTTTCACGAAGATCTGCAT 216655 >seq869 Length=1271022 Score = 147 bits (162), Expect = 4e-30 Identities = 458/709 (65%), Gaps = 19/709 (3%) Strand=Plus/Minus Query 38957 ATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAAA 39016 ||||||||||||||| | ||||| ||||||||| ||||||||| || | || || | Sbjct 484139 ATCGGCCACAAATTCTATATATTCCGACATTAATTTACAATTCATGCCTATCAAATTGAC 484080 Query 39017 TGGTAATGCATCATCAATAAATTCtttttctatttctacagctt--gtt-taattatcat 39073 || || ||||| || ||||| | ||| |||| || |||| || ||||| || Sbjct 484079 GGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCGCTTCAGTGATAATTTCAAT 484020 Query 39074 aattatattattttttgataatttatatttaatatgattcgcatataGTAA-ACATGCAA 39132 |||| | | | || | || || ||| | || | | | ||| ||| |||| Sbjct 484019 AATTCTCTC-TCGACTGGGACGTTGTACCAAATGT--TT---AAACATTAATACA-GCAA 483967 Query 39133 AATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCA 39192 |||| ||||||||| || || | ||||| || ||||| || || | || |||| Sbjct 483966 AATCACAATGTAAACCCTCATCACGTGATATCAACTCATTGGAGAATGTAAGACCAGGCA 483907 Query 39193 TTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCT 39252 | | || | || || |||||||| || || |||||||| | | |||||| ||||||| Sbjct 483906 TAAGACCACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTAAAGAAAATACCCT 483847 Query 39253 CCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAA--AATCCA 39310 | ||| ||||| || || || | | | ||||| ||| | || || || |||||| Sbjct 483846 CTACAGCAGCAAAAGCAATAATACGTTCACCAAA-ATTTGCTGATT-TCGAAGAAATCCA 483789 Query 39311 ATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 39370 | || |||||||| || || || | || || ||| |||| ||||| ||||| | Sbjct 483788 AGCCATTGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAAGAG 483729 Query 39371 TTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCAGA 39430 | || | |||||||||||| Sbjct 483728 ATAATCACGCTGTTCACGATCCTTAATATAACTATCAATTAGAATACTATACATTTCAGA 483669 Query 39431 ATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACTGAAC 39490 |||||| |||||| || |||||||| ||| || | ||| |||| | || || Sbjct 483668 GTGTACATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCTCTGTAACTTGTAC 483609 Query 39491 TTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAA 39550 ||| | |||| ||||| || | ||| ||| ||||| ||||| || || |||||||| Sbjct 483608 TTCTTGAGAGAAACGTTCGACAAGATTTTCATTGACAATGCCATCGGAAGCGGCGAAGAA 483549 Query 39551 TGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAG 39610 || | ||||| | ||| ||||| ||||| || | | ||||||| | || Sbjct 483548 AGCAAGAACATGTGAAATGAAATGACGCTCATTGTCGGTGAGTCTTTCCCA--GTCGGAG 483491 Query 39611 --ATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGG 39657 ||| || || | |||||||||||||| ||||||||||| ||| ||| Sbjct 483490 TTATCTTTAGAAAGATCTACTTCTTCTACCGTCCAAAAAGAAGCTTCGG 483442 >seq1190 Length=275307 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || ||||| || || ||||| | ||||| |||||| ||||| || Sbjct 186900 ACCACCACGAAGGCGCAATACCAAGTGCAAAGTGGATTCTTTTTGAATATTGTAATCAGA 186841 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || || | || ||||||||||| ||||| ||||| || | ||||| || ||||| Sbjct 186840 GAGAGTACGGCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGG 186781 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||||||||| || || || || ||| ||||| ||||| || |||| || || Sbjct 186780 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATAGTGTCGGACGGCTCGAC 186721 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||| ||||| ||||| |||| ||||| | || ||||||||| Sbjct 186720 CTCAAGAGTGATGGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCATT 186672 >seq1304 Length=336898 Score = 132 bits (146), Expect = 9e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||| | ||| || | ||| ||||||||||| | || || || || || Sbjct 274167 ATGATACCACCACGAAGACGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAG 274226 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || || | || | || ||||||||||||||||| || || || | ||||| || Sbjct 274227 TCGGACAAGGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCT 274286 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || |||||||| ||||| ||||| || ||||| || || || || | Sbjct 274287 GGGGGGATACCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGC 274346 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| | |||||||| ||||||||||| ||||| | ||| |||||||| Sbjct 274347 TCAACTTCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 274399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905116618775400