Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq287 120 9e-22 seq1349 114 4e-20 seq168 96.9 1e-14 >seq287 Length=1085586 Score = 120 bits (132), Expect = 9e-22 Identities = 227/334 (68%), Gaps = 0/334 (0%) Strand=Plus/Minus Query 289023 TTTTTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 |||| |||||||||||| ||||| |||||||| | | ||| |||| ||||| | || Sbjct 86955 TTTTCGACCAACAGCATCGATTTCATCAATGAACAATATACATGGAGCATTTTTACGTGC 86896 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 || ||||| | || | || | || | |||| ||| ||| ||||||| | ||||| Sbjct 86895 CATGGCAAACATATCACGCACTCTAGAGGGACCAACACCCACAAACATTTCCAGGAATTC 86836 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 || |||| || ||| || | ||||| ||||| |||||| || | || | | Sbjct 86835 GGATCCGGAGACAGTAATAAAAGGCACATTAGCTTCACCTGCTGTCGCTTTAGCTAATAA 86776 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 ||| ||||| || ||||| || || ||| | | | || || |||| |||||| || Sbjct 86775 TGTTTTACCAGTACCAGGAGGCCCAGTTAACATAGCACCTTTGGGTATTTTTGCGCCTAA 86716 Query 289263 AGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 | | |||| | ||| | |||| ||| | |||| |||| || |||| ||| || Sbjct 86715 ATCTATGTATTGTTGAGGATTTTTTAGAAAATTAACAAATTCCATAATTTCAATTTTGGC 86656 Query 289323 CTCATCACATCCTGCTACATCAGCAAAAGTAATA 289356 || ||||| ||||| ||||| |||| |||| Sbjct 86655 TTCTTCACAACCTGCAACATCTCTGAAAGAAATA 86622 >seq1349 Length=137958 Score = 114 bits (126), Expect = 4e-20 Identities = 207/297 (70%), Gaps = 12/297 (4%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||||| || ||| | ||||||| ||| || | ||||||||| ||||||||||| Sbjct 4767 ATCATAATTAACCATTACAGATTCCATAGCCTTTATAAGACGACGCTGGATATAACCAGT 4826 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || |||||||||||||||||||| ||||| |||||||||||||||| |||| || Sbjct 4827 TTCAGCAGTTTTTACAGCTGTATCAATAAGACCTTCACGACCACCCATAGCGTGGA--AA 4884 Query 302673 TAGCTCTTCCGGTCG---TAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTC 302729 ||| ||| | | | | || | | | | || | || |||||||| | | || Sbjct 4885 TAG-AATTCGGATGGAGTCAAACCGGCTAGATATGAATTTTCGACGAAACCTCTAGATTC 4943 Query 302730 GGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 || || ||||||| || | || ||||||| || | || | | || || || Sbjct 4944 AGGACCGTAATCGTC---TTTAATGAAATGTGGCAAAGTACGCTTGCGAAAACCATAAGG 5000 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||||| || || || |||||||| || || | || | ||| | ||| |||||||| Sbjct 5001 TATACGTTTACCTTCGACGTTCTGTTGCCCTACACAAGCAATAACCTGGGAAATATT 5057 Score = 91.5 bits (100), Expect = 4e-13 Identities = 123/169 (73%), Gaps = 13/169 (8%) Strand=Plus/Plus Query 303619 TCTTCATC--TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACG 303676 ||| |||| |||||| | || |||||||| |||||||||||||||||||| ||||| | Sbjct 5993 TCTCCATCGATTGGGGAACGTGCAAATTCATTTCATCACCGTCAAAATCAGCGTTATAGG 6052 Query 303677 GCTTTGTGTCCGCAACGTTCATCCGGAAAGTATCACCCTG----CATCATAACACGGGCT 303732 | || || | |||||| ||||| || | ||| || | | ||||||| Sbjct 6053 GTGAGGTACACGACAAGTTCATACGGAATGT-TGACCATGGCAAAACCTTAACACG---- 6107 Query 303733 TTATGACACATCATAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAA 303781 ||||| ||||||| |||| | || | ||| |||||||||||||||| Sbjct 6108 --ATGACCCATCATACTCATTTTATGCAAAGTGGGCTGACGATTGAAAA 6154 >seq168 Length=1485889 Score = 96.9 bits (106), Expect = 1e-14 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 ||||| || || ||| ||||||||| ||||| ||||||||||| ||||||||||| ||| Sbjct 428227 GCACCATGAGATATCTGACAATCACGTTCCATCTCACCGAAACGTAGACCACCATCACGA 428168 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 || || || || ||| ||||| ||| | | |||||| || | ||| || Sbjct 428167 GCTCTGCCTTCCATAGGTTGACGCACCAGAATCTGTACAGGACCACGGGCTCTGCTGTGA 428108 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657 || |||| |||||||| |||||||| || ||| | | |||||| | ||| Sbjct 428107 ATTTTGTCATCCACCATATGTTTGAGACGTTGATAGTAGGTGGGACCCAAGAA 428055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471785296823281