Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_021336.1 Length=27190 Score E Sequences producing significant alignments: (Bits) Value seq1089 181 2e-41 >seq1089 Length=16580 Score = 181 bits (200), Expect = 2e-41 Identities = 721/1116 (65%), Gaps = 48/1116 (4%) Strand=Plus/Plus Query 16845 AGGGGTATTCTTGATTAAGAAACAAATTAAAGCTGAATATCAAAAGAAATTAGAAGACTT 16904 ||| || || || | ||| | ||||| ||| | |||||||| || ||| || | || Sbjct 4050 AGGAGTGTTTTTACTAAAGTATCAAATCAAACCAGAATATCAGAACGTTTTACAAAATTT 4109 Query 16905 CTTTAATATGTTTGGTTATAAAAAGAATGAAGTTAAAATACCTAATTTCCATACTAGACA 16964 |||| |||| |||||| ||| ||| ||| ||| | || || || || |||||||| Sbjct 4110 CTTTTCCATGTATGGTTACAAATCAAATCTAGTAAAAGTTCCAAACTTACACACTAGACA 4169 Query 16965 GAATTGGAATTATGTTGAAACGAAAAATTGTAATTTAATTGGA-CATT-----TTAACAC 17018 |||||||| ||||| |||| || || || | | || || | || | | Sbjct 4170 AAATTGGAACTATGTGCAAACAGAAGGATGCAACATTACAGGTTCAATGGCGGTTGATA- 4228 Query 17019 AGAAGATTTAAATGAATTAAAAGCTGTGTTCGATAGAGGGATCACTTTATGGCACACGAA 17078 | | |||| |||| | ||| | || |||| || || || |||||||| || | Sbjct 4229 ATATGATTGAAAT--ACGAAACA---TCTTTAATAGCGGAATAACATTATGGCATACAGA 4283 Query 17079 TGATATTGGAAACTACGCTTTAAGTAATGAGGTGATATAAAAATGTTTAATCAATTACAA 17138 ||||||||| || || || || |||| ||| |||| || ||| || || || | Sbjct 4284 TGATATTGGTAATTATGCCTTGTCGAATGGAGTGTTATAGAA-TGTCAAA--AAATAAAT 4340 Query 17139 ACATATATGAATCCTAATCAGATTCAAAAACATG-AGGGAAATCGTTATTATTGGCACTA 17197 || | || ||| | ||||| || || | ||| |||| | || || Sbjct 4341 TCAAA----AACCCTTACCAGAT-CATGGCAATCTATACAAACCGTTGGCGTAATCATTA 4395 Query 17198 TGTAAAATATTTAAGCCAATTAACATTTCAGCTATTTGAGTGGGAAAACCTACCTAAAAC 17257 | | | ||||| ||||| ||| | ||||| |||||||||||||| ||| Sbjct 4396 TCGAGATTATTTGTTTTTGTTAACCACTCAATTGTTTGAATGGGAAAACCTACCGCCAAC 4455 Query 17258 AGTTGATCCGCGTTACATGGAAATGATGTTACATACACATGGATATGTTGGATTCTTCCA 17317 ||||| || |||| ||| ||| | || |||||| || | ||| ||| ||| | Sbjct 4456 CGTTGACCCACGTTTCATAGAAGTTGAATTGCATACAAGAGGGTTTGTGTCATTTTTCAA 4515 Query 17318 TGATGAGACACTAGATTATATGGCTGTACAAGGTAGTGCAGG---TGTTAAAATAAATCG 17374 || ||| | |||||| |||||| ||| | ||| || | || || ||| Sbjct 4516 AGACCCAACATTGAGTTATATAGCTGTA---GGTGGCGCAATGTCTGGTCAACTAGATCA 4572 Query 17375 TTATTTACAACCGACTGTTTTTAAAACCGCTACACCAGATTATACGAATCGATCGTTTAA 17434 ||| ||| || |||| || | | ||||| | |||| || ||||||| Sbjct 4573 CTATAATTTACCCACCTATTTTCAAGCTACAGCACCAAACTATAACAA---ATCGTTTCG 4629 Query 17435 TATTTATAATTTTGGTGATAATTTAGAATTGATTGACAAGAAAAATACAGGTGTTGTGAT 17494 | || || | | |||| ||| ||| || ||| | |||||| | || Sbjct 4630 ACTATACAACTACAGCGATA---------TGAATGAAAA---AAACATGGGTGTTTTAAT 4677 Query 17495 TTGGAATAATGATATGCATCTTCCAAGTA-TGGAATCTATTATGATGTTCGCACAAGATT 17553 || || ||||| ||| | ||| | | ||||| | ||| ||||| ||| |||| Sbjct 4678 ATGCAACAATGACTTGCGTTATCCTACAACTGGAA-CAATTGATATGTTTGCAGAAGAAC 4736 Query 17554 TAGCTGAATTAAAAGAGATTATAAGAATTAATCAGAATGCACAAAAGACACCTGTTTTAA 17613 | || ||| | |||| |||| |||| | |||| ||| |||||||| ||||| ||||| | Sbjct 4737 TTGCAGAAATTAAAGCCATTACAAGAGTCAATCTGAACGCACAAAAAACACCAGTTTTGA 4796 Query 17614 TTACAGCAGAAGACACAAATAAGTTTTCCATGATGAATATTTATAATCAATATGAAGGTA 17673 || | | || || |||||| |||| ||| | || ||||| || ||||||||||| | Sbjct 4797 TTGCTGTCGATGATTTAAATAAACTTTCTATGTTAAACATTTACAACCAATATGAAGGCA 4856 Query 17674 ATGCACCAGTCATTGTTGCGAATAAACATTTTGATCCTAAATCCATTAATGTATTTAAAA 17733 |||| || | || ||| | ||| | | ||| | |||| ||||| ||||| |||| Sbjct 4857 ATGCTCCTGCTATCGTTACATCAAAAGAAGCTAATCTTGAATCTATTAAAGTATTCAAAA 4916 Query 17734 CGGATGCTCCGTTTGTTGTTGATAAGTTGAACGATCAGAAAAATGCAATATGGTCTGAAT 17793 | ||||| |||| |||||||| || | || ||| | ||||| ||| ||| | Sbjct 4917 CAGATGCACCGTACGTTGTTGACAAAATCAATACACAGCGTATGGCAATCTGGAATGAGT 4976 Query 17794 TTATGACATGGCTCGGTATCAATAATTCTAATATTGATAAGAAAGAAAGATTGGTTCAAG 17853 | ||||| | |||||||| | || | |||| ||| || ||| | |||| | | Sbjct 4977 TCATGACTTTTCTCGGTATTCAAAACACCAATAATGAAAAACGTGAACGCATGGTGGAGG 5036 Query 17854 CTGAAG-CTACTTCTAATGATGAACAAATTG-AAGCTAGTGGAAACATTATGTTGAAAGC 17911 ||||| | || | ||| ||| ||| | | || || | ||||||||||||||| | Sbjct 5037 ATGAAGTCAACAGC-AATAATGGTCAAGTCGAAAACTCG-ACAAACATTATGTTGAAGTC 5094 Query 17912 TAGAGAAGAAGCATGTGAAAGAATTAATCAATTGTA 17947 |||||||||||| | ||| ||||| ||||||| Sbjct 5095 AAGAGAAGAAGCAGTTAAAAAGATTAACGAATTGTA 5130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 86887879015707