Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_021529.2 Length=247511 Score E Sequences producing significant alignments: (Bits) Value seq253 134 2e-26 seq1596 96.9 5e-15 >seq253 Length=360942 Score = 134 bits (148), Expect = 2e-26 Identities = 1024/1632 (63%), Gaps = 69/1632 (4%) Strand=Plus/Minus Query 171958 AAAGAAAACGCGAATAAAGACTCGAAAGTGATCCCTACAATGCGTGACTTGGTAGCAGGT 172017 || ||||| || || |||||| |||||||||||||| ||||| ||| | ||||| Sbjct 105763 AATGAAAATGCAAACAAAGACAGCAAAGTGATCCCTACCCAACGTGATTTGCTCGCAGGC 105704 Query 172018 ACAGTTGCGAAACAATACGCACTCGAAGACTTTCTACCGAAGCACATTGCAGAAGCACAT 172077 | || || || || ||||| || | || | || | | | || || Sbjct 105703 ATTGTCGCAAAGCATTACGCTAAACAACATATTTTGCCACGTGATGTGGTTATTGCTCAC 105644 Query 172078 ATAAGTGGCGATATTCATTTTCATGATTTAGATTACAGTCCATTATTTCCGCAA-TTCAA 172136 | | || || ||||||| ||| ||| | ||||| ||||| ||||| || || || Sbjct 105643 GAACGCGGTGAAATTCATTATCACGATCTCGATTATGCGCCATT-TTTCCCCATGTTTAA 105585 Query 172137 CTGTATGCTTATTGATATCAAAGGCATGCTTGAAAACGGATTTAAAATGGGTAATGCTGA 172196 ||||||||| |||||| | |||||||| | || || ||||||||||||||||| || Sbjct 105584 CTGTATGCTGATTGATCTTGAAGGCATGTTAACTAATGGGTTTAAAATGGGTAATGCCGA 105525 Query 172197 GATCGAAGAGCCAAACAGTATCGCGACTGCTGCGACTATTGTCA-CTCAGATCATACAAC 172255 || || || || || | ||||| | | | || || | || || || | Sbjct 105524 AATAGAGCCTCCTAAATCAATTTCCACTGCCACCGC-AGTGACAGCCCAAATTATCGCTC 105466 Query 172256 AAGTAAGTAGTCACATTTACGGCGGCAACACTGTTAATAGAATTGACGAAGTTCTAGCAC 172315 ||||| ||| || ||||| || |||| ||| | || | ||||| ||| | || || | Sbjct 105465 AAGTAGCTAGCCATATTTATGGTGGCACCACCATCAACCGCATTGATGAAATCCTTGCTC 105406 Query 172316 CATATGTTCGTAAGTCGTATTACAAATGGCTTGAGGTTGGTCGCGAA--GAGCATCCCGA 172373 | ||||| | | ||| | ||| || | | | | | |||| || Sbjct 105405 CTTATGTCCACATCAGCTATGAAAAACATCTAAAAACAGCGATCAATTGGGGCATT--GA 105348 Query 172374 TTCAGACTCAAAAGCAGCTATCTTTGCACGTAAACGTGTCGAGAAAGAAACGTACGACGC 172433 ||| | |||| ||||| | | |||| ||| |||||| ||||| || Sbjct 105347 ---AGATGCGAAAG--GCTATGCTGATAGCCAAAC----CGAAAAAGAATGTTACGATGC 105297 Query 172434 TTTTCAAACGTTTGAGTATCAAGTTAACACAATGCAGACTTCGAACGGTCAGACGCCATT 172493 || ||| | |||| || |||| |||||| |||| || | || ||||| || || || Sbjct 105296 CTTCCAATCCCTTGAATACGAAGTGAACACACTGCATACCGCCAATGGTCAAACCCCCTT 105237 Query 172494 CACGACGATTAACTTCGGTCTAGGTACATCGTGGGAAGAAAAGCTT-ATTCAGAAATGCA 172552 | || || || ||| |||| |||||| |||| | |||| || || ||| || Sbjct 105236 CGTAACCTTTGGGTTTGGTTTAGGCACATCGCAAGAAGCAC-GCTTGATCCAACAATCCA 105178 Query 172553 TTCTGCAAAATCGAATTGCTGGTCTAGGCAAGACAAAGAAAACAGCGATTTTCCCGAAAC 172612 |||| |||| || || ||||| |||| || | ||||| || ||||||| ||| Sbjct 105177 TTCTAAAAAACCGTATCGCTGGGTTAGGTAAAAATCGTAAAACTGCCGTTTTCCCTAAAT 105118 Query 172613 TTGTATTCACTATCAAAGATGGTGTGAACTTGAAAGAAGGCGATCCGTGTTACGGCATTA 172672 | || || |||| ||| | || | || || | || ||||| || | || | Sbjct 105117 TAGTGTTTGCTATTAAAAAAGGCCTTAATCACCAATATGGTGATCCTAACTATGATATCA 105058 Query 172673 AGAAGCTTGCACTTGAATGCGCAAGTAAGCGCATGTATCCAGATATCTTGAGCTATGAAA 172732 | || | ||| | || || || || || ||||||||||| || ||||| | |||||| | Sbjct 105057 AACAGTTAGCATTAGAGTGTGCGAGCAAACGCATGTATCCCGACATCTTAAACTATGACA 104998 Query 172733 AGCTAGTAGAAACAACTGGCGGGTTTAAGTCACCGATGGGATGTCGTTCATTCTTAGGCG 172792 | | || || ||| ||| |||||| | || ||||| || || |||||||| | Sbjct 104997 AAGTTGTCGATGTAACGGGCTCGTTTAAAACGCCAATGGGCTGCCGCAGCTTCTTAGGTG 104938 Query 172793 ACTGGAAAAACGAAGATGGTGA--AACTGTATTCGACGGTCGAAACAATCTAGGCGTTGT 172850 || | | ||| |||| | || | || || || || || ||| |||| || | Sbjct 104937 TCT---ACGAAGAAAATGGCCAACAAATTCAT--GATGGCCGTAATAATTTAGGTGTCAT 104883 Query 172851 CTCGTTGAACATTCCCCGAATTGCAATTGAAGCATCTGGTGATACTGCACGATTCTTTG- 172909 | ||| | || || ||||| |||||||| || || | ||| | || | Sbjct 104882 TAGCCTTAACCTGCCGCGTATTGCCATTGAAGCGCAAGGCAATGAAG-ACGCGTTTTGGC 104824 Query 172910 AAATTCTTCATGATCGTTGCACACTCGCGTACGAAGCGTTGATGCTACGTATTAAACGCT 172969 || || | || || | |||| | |||| |||||| ||| ||| |||| Sbjct 104823 AACGACTCGAAGAACGCCTAGCGATCGCCAAAAAAGCCTTGATGACACGCATTGCACGCC 104764 Query 172970 TTGATGATGTGACTGCATCAGTTGCACCGATTCTGTACTGTGAAGGTGCAATGGGTGTAC 173029 | || |||| | ||| |||||||| || || || ||||| || || |||| Sbjct 104763 TAGAAAATGTCAAAGCACGCGTTGCACCTATCCTATATATGGAAGGCGCCTGCGGAGTAC 104704 Query 173030 GTTTGAAACCAACTGATAAAGTCAGTGAAGTGTTCAAGCATGGTCGCTCAAGTATCTCAC 173089 | | ||| || ||||| || || | || || | |||||| || || ||| Sbjct 104703 GACTCAAAGCAGATGATAGTGTGGCGGAGATCTTTAAAAACGGTCGCGCATCCATATCAT 104644 Query 173090 TTGGTTACATCGGCTTACACGAGGCAGTAA---CACT-TCTG--------TCGCCTGATA 173137 | || || || |||||||| ||| || | | |||| | || || || Sbjct 104643 TAGGCTATATTGGCTTACATGAGACAATCAATGCACTATTTGGTACACAACAGCATGTGT 104584 Query 173138 AAGACATGCATACATTCGAGTCACAGCATAAGCAATTCCTTGCTGAGAAGATTGTAGAAA 173197 | |||| | |||| | | | || | |||| || | |||||| | | Sbjct 104583 ACGACA---ACCCATT--ATTAAGAGAAAAAGCCATCGC----------GATTGT-GGAT 104540 Query 173198 CGCTTA----GAGCGTATACTGACGCATGGAAAGAACTGACTGGTTACGGATTTAGTCTG 173253 ||| || |||| || || | |||||||| | || || || || ||||| || Sbjct 104539 CGCCTACGCCAAGCG---ACCGATGAATGGAAAGCAGAAACAGGCTATGGTTTTAGCCTT 104483 Query 173254 TACAGCACACCAAGCGAATCGCTATGTGATCGTTTCTGTCGTCTTGATCAAGAGAAGTAC 173313 || ||||| ||||| ||| | ||||||||||||||||| |||||| | ||| Sbjct 104482 TATAGCACCCCAAGTGAAAACTTGTGTGATCGTTTCTGTCGCCTTGATACTGCTGAGTTT 104423 Query 173314 GGTATCATTACTGGTATCAATGACAAAGACTACTATACAAACTCGTTCCACTTAGACGTA 173373 || | || ||| | | || |||| ||||| || || |||||| | || | Sbjct 104422 GGGGTTATCGAAGGTGTTACGGAAAAAGGTTACTACACCAATAGTTTCCACCTTGA--TG 104365 Query 173374 TTCAAGAA--AGTGAATCCGTTCGAGAAGATTGACTTTGAAGCATCGTACCCAGCATATG 173431 || || || || || || | ||| |||||||| |||||| | ||||| || | Sbjct 104364 TTGAAAAACGCGTTAACCCATACGATAAGATTGATTTTGAACAGCCATACCCTGCTCTCG 104305 Query 173432 CAAACGGCGGTTTCATTTGCTATGCAGAGTTCCCGAACATGCGCGACAATATCAAAGGTC 173491 |||| |||||||| |||||||| | |||| || ||| | | |||| | |||| | Sbjct 104304 CAAATGGCGGTTTTATTTGCTACGGCGAGTATCCAAACTTACAGCACAACTTGAAAGCAC 104245 Query 173492 TAGAACGTGTATGGGATTA-TGCTCATAGCAAAGTTGCTTACTTCGGTACAAACACACCG 173550 | ||| || ||||| || ||| ||| | || |||| | || || ||||| || Sbjct 104244 TTGAAGACGTTTGGGACTACAGCTATGAGC-ATGTACCTTATTATGGAACCAACACGCCT 104186 Query 173551 ATTGATCAATGT 173562 |||||| ||||| Sbjct 104185 ATTGATGAATGT 104174 >seq1596 Length=248270 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 237493 GTGTGAACATCACTTCGTGACAATTGATGGTAAAGCAACAGTTGCTTACATCCCTAACAA 237552 ||||||||| || || || || ||||||||||| || | || |||||||| || || | Sbjct 182989 GTGTGAACACCATTTTGTCACTATTGATGGTAAGGCCATTGTGGCTTACATTCCAAAAGA 182930 Query 237553 GAAAGTTCTTGGCTTGTCTAAGATGAATCGCATTGTTGAGTATTTCAGTCGTCGCCCTCA 237612 ||||| ||||||| || ||||| || || ||||| ||| ||| | ||||| || Sbjct 182929 TAAAGTGATTGGCTTATCAAAGATTAACCGTATTGTGCAGTTTTTTTCACAACGCCCACA 182870 Query 237613 AGTGCAAGAGCGTTTAAC 237630 ||| ||||| |||||||| Sbjct 182869 AGTCCAAGAACGTTTAAC 182852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 791890243287080