Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_021540.1 Length=69278 Score E Sequences producing significant alignments: (Bits) Value seq410 102 4e-17 seq87 87.8 8e-13 >seq410 Length=72445 Score = 102 bits (112), Expect = 4e-17 Identities = 205/298 (69%), Gaps = 7/298 (2%) Strand=Plus/Minus Query 25802 GATGACACCAAGATTATTGCTTACCTAGCTACCAATAGTTGCGCAGAAAATAAGTTAAGT 25861 ||||| || || || || | || |||| ||||| | || || |||| | ||| || Sbjct 62740 GATGATACTAAAATCATCACATATTTAGCGACCAACAACTGTTCACAAAACCATTTAGGT 62681 Query 25862 TTAAAAGACTTAG-CGCATGAATTTGCAGGTAACTATGCTCAATCAGATATCAATGACAT 25920 ||||||| || | | || || |||||||||||||||||| | |||||||||||| || Sbjct 62680 TTAAAAG-CTAACTCACACGAGTTTGCAGGTAACTATGCTGTAGAAGATATCAATGATAT 62622 Query 25921 AACCAAAATACCTAACGATAAACTTA-TGGAATATAACTTAGTGGATTGTTTATCTACTT 25979 | ||||||| | | | | ||| ||||||||||| | |||| ||||| ||| Sbjct 62621 CAATCTAATACCT-CCTAAAGAGTTATTGGAATATAACGTCAAAGATTCCTTATCCACTA 62563 Query 25980 GGTTCGTATTCAATAAGTATTATCCAATTATGCTTCAGGATAATCAGTTACATGTTTATG 26039 | || | | ||||||| || | | | || ||||||||| |||| |||| Sbjct 62562 ACTATGTTTATGACAAGTATTGGCCTACTGTACTAGCTGATAATCAGCGTTATGTATATG 62503 Query 26040 AGTTCTTTAAGAAG---ATATTAAAAAATATTATTCAAATGGAACTTACAGGTATGCC 26094 | || ||| || | |||||| ||||||||||||||| | | |||||| |||| Sbjct 62502 AAGTCATTATGATGCCTGCATTAAAGAATATTATTCAAATGCAGTTAACAGGTTTGCC 62445 Score = 96.9 bits (106), Expect = 2e-15 Identities = 180/262 (69%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 54661 TTGACCATTAGCACTACGTGCCATTGCATCAATCATTCCACGAGTTAATGCACCAATTAA 54720 ||||||| ||||| |||| | || |||||||||| |||| || ||||||| | Sbjct 31473 TTGACCACTAGCAGTACGACCAATGATATCAATCATTGCACGTTCTAGTGCACCAGAAAT 31414 Query 54721 TTTTTGGTTATCTGATAGTAATTCAGCATCTGCTTCACCATATACAGAATCTTTAACAGG 54780 ||| ||||||| | | ||| ||||| | ||||||| | ||| | ||||||| Sbjct 31413 ACGTTGATTATCTGCAATAAGTTCTGCATCAGGTTCACCAAAAACACTGCCAGTAACAGG 31354 Query 54781 TAAGTAAGGAACTACTACAAATGGTAATTTACCATCAGGGTATGGATTCTTCTCTAAACG 54840 | || | | ||| |||| || ||||| |||||||| |||||||| | || |||| Sbjct 31353 CATATAGGCAGAAACTTCAAACGGGAATTTTCCATCAGGATATGGATTTCTATCACAACG 31294 Query 54841 AATCATTACATCGTCAACCCAAGATGCAACAATAGGTG-TAGTTACACCTGAACCATCAA 54899 ||| |||| || | || | | | |||| |||| || | |||| ||| |||| Sbjct 31293 AATAATTAAGTCACCTACATAGGCAACCACAACAGGTTCTAACT-CACCATTACCTTCAA 31235 Query 54900 TATCCCAGTATCCCCAATACTC 54921 ||||||| ||||||||||| Sbjct 31234 TATCCCACATACCCCAATACTC 31213 Score = 84.2 bits (92), Expect = 1e-11 Identities = 89/117 (76%), Gaps = 3/117 (3%) Strand=Plus/Minus Query 32317 CTAGAACTTTATGACGGAG---TAGTTAAACCAAAGTTAACCAAGAATACTGCTGAATCT 32373 || ||| | ||||||| || |||||||||| || |||| || || ||| |||| | Sbjct 56811 CTTGAATTATATGACGTAGGGTTAGTTAAACCTAAACTAACAAAAAACACTTCTGACAGT 56752 Query 32374 GTACGTAATGAAGAAATTGAAGGTAAGACACCAACTAATATGTTGATGTATGGTACT 32430 |||||||||||| ||||| || | |||||| ||||||||||||||| || ||| Sbjct 56751 ACACGTAATGAAGATATTGACGGAAGAACACCAGCTAATATGTTGATGTTCGGAACT 56695 >seq87 Length=489008 Score = 87.8 bits (96), Expect = 8e-13 Identities = 194/284 (68%), Gaps = 14/284 (5%) Strand=Plus/Plus Query 11735 TGGTATTGATGACAGGGGTGAGATTATTACCTTCTGGAAACCAGATGACTTCGATAAAGC 11794 ||||||||||||| | | ||| || ||||| || | || |||| ||| || || | | Sbjct 413221 TGGTATTGATGACCGCGCTGAAATCATTACGTTTTATAATCCAGGTGAATTTGAAATGGG 413280 Query 11795 TTGTCTACGTCCTTGTATG--TTCCAACATCATTTCACTTTGATTGATGACCAACTAT-C 11851 || |||| ||||||||| | | | | |||||| || | | ||| ||| | | Sbjct 413281 ATGCTTACGGCCTTGTATGCATACTCATACTTTTTCAC--TGCTCGGTGA--TACTCTGC 413336 Query 11852 ACTT-ACTTCGTATCAGCGTAGTTGTGATGTTCCGTTAGGGCTAAACTTTAACATGATTC 11910 |||| || || ||||| |||||||| ||||| || | || | || |||||| | | Sbjct 413337 ACTTAACCTCCTATCAACGTAGTTGCGATGTACCACTTGGATTGAATTTTAACCAAGTAC 413396 Query 11911 AAGTATATGTATTCTTGGTTCTAATGGCTCAGATTACAGGTAATCAACCATTGGGTGCTA 11970 || | || || | | | | ||||| | |||||| ||| ||||||| |||| Sbjct 413397 AATGTTTCGTGTTACTCGCTTTGATGGCGCGGATTACGGGTCATCAACC---GGGTAAGG 413453 Query 11971 CGCACCAT---ATTGTGAATGCTCATATGTATGAAGACCAAGTA 12011 || | ||| ||||||||||| ||||| |||||| ||||| || Sbjct 413454 CGTATCATAAAATTGTGAATGCACATATTTATGAAAACCAATTA 413497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 221560174350127