Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq1596 131 4e-26 >seq1596 Length=248270 Score = 131 bits (144), Expect = 4e-26 Identities = 336/501 (67%), Gaps = 18/501 (4%) Strand=Plus/Minus Query 32121 CCCATGAACTGAAGGAAGTGGGTGATCAGTGGCGCACGCCGGACAACATTTTCT-GGGGA 32179 ||||||||||||| ||| | |||||||| ||| |||| || | | || | | ||||| Sbjct 107788 CCCATGAACTGAAAGAAATTGGTGATCAATGGTGCACACCA-AGTGCTTTGTATTGGGGA 107730 Query 32180 ATTAACACCCTGTTTGGCCCGTTTGTTCTGGATCTGTTCACTGACGGTGATAACGCCAAA 32239 |||| | | | | || || |||||| |||| |||||||| | || || Sbjct 107729 ATTAGCTCAATATACGGGATTTTCAAACTGGATTTGTTTACTGACGGAAAAAATAGTAAG 107670 Query 32240 TGTGCCGCGTATTAC---ACGGCGGAAGACAACGCGCTGGCGCATGACTGGTC-AGAACG 32295 || | |||| | || || || || || || ||| |||| |||||||| | | | Sbjct 107669 ---GCTCCTTATTTCTATACTGCAGAGGATAATGCACTGACGCAGGACTGGTCCACTAAG 107613 Query 32296 CCTTGCGGAGCTTAAAGGTGCTGCCTTTGGTAATCCTCCATACAGCCGCGCCAGTCAGCA 32355 | | || ||| || || ||||| ||||| ||||| ||||| ||| ||| | Sbjct 107612 C-TGGCAGAGGTTGGCGGCGCTGCTTTTGGAAATCCGCCATATTCCCGT---AGTTCCTA 107557 Query 32356 TGAGGGGCAATA---CATCACCGGCATGCGTTACATCATGAAACATGCCAGTGCCATGCG 32412 | | | || | |||||| ||| | || |||| ||||| ||||| | ||||| Sbjct 107556 TCACGAAAAACAGCCCATCACTGGCGTTGGTCACATTATGAATCATGCAATGAAGATGCG 107497 Query 32413 TGATAAGGGCGGGCGCTATGTTTTCCTGATCAAAGCTGCCACCAGCGAAGTGTGGTGGCC 32472 || || || || |||||||| || | | |||||||| || |||||| |||||||| Sbjct 107496 AGAGAAAGGTGGTCGCTATGTGTTTTTACTAAAAGCTGCAACTAGCGAAACATGGTGGCC 107437 Query 32473 GGAAGATGCAGATCATATTGCTTTTATTCGCGGGCGTATTGGTTTTGAACTGCCTGTCTG 32532 || |||| |||||| || |||||||| || ||||||||||| || | || | || Sbjct 107436 TGAGCATGCTGATCATGTTTGCTTTATTCGTGGTCGTATTGGTTTCGATGTCCCCCTATG 107377 Query 32533 GTTTATCCC-GAAAGACGAGAAGCAGGTACCGACAGGAGCTTTTTTCGCTGGTGCTATTG 32591 ||||| ||| | || ||| || ||| || | || || || || || ||||| || | Sbjct 107376 GTTTAACCCAGTTAG-CGATAAACAGAAGCCAAGCGGTGCATTCTTTGCCGGTGCAATAG 107318 Query 32592 CTGTTTTTGACAAGACCTGGA 32612 ||||| || || || |||| Sbjct 107317 TCGTTTTCGATAAAACATGGA 107297 Score = 89.7 bits (98), Expect = 1e-13 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 41248 CGTCATCAGCGCGGTTATGGTTCGAAGTGGGACGTTATCCGCGCGCGTGTGCTGAAGCGT 41307 || ||| ||||||||||||| || ||||||||| || || || || || || | ||| Sbjct 99541 CGCCATGAGCGCGGTTATGGATCTAAGTGGGACAAGATACGTGCTCGCGTTTTGCATCGT 99482 Query 41308 GACAAAGGCCTGTGTCAGTTGTGTTTGCGTGCCGGT-GTGGTGCGCGAGGCGAAAACCGT 41366 || ||| || ||||| ||||||| | ||| | || || || || || || Sbjct 99481 GATAAACATCTATGTCAAGAGTGTTTGAAGTCAGGTAGACCAACG-GAAGCCAAGACAGT 99423 Query 41367 TGACCACATCATTCCTAAAGCGCATGGCGGCACTGATGCCGACCGTAATCTGCAGAGTCT 41426 |||||||||| || || ||||||| || || |||| || |||| ||||| || Sbjct 99422 GGACCACATCAAACCCAAGTCGCATGGTGGTACCGATGATGATAGTAACCTGCAAGCGCT 99363 Query 41427 GTGCTGGCCGTGTCATA-AGGCGAAGACGGCCCGTGAACG 41465 ||||||| | || |||| | || |||||||| ||||||| Sbjct 99362 GTGCTGGTCATGCCATAGAAGC-AAGACGGCAAGTGAACG 99324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132595702699922