Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1348 289 3e-73 seq964 158 1e-33 seq1304 145 7e-30 seq1190 140 3e-28 seq418 91.5 1e-13 >seq1348 Length=1847788 Score = 289 bits (320), Expect = 3e-73 Identities = 726/1095 (66%), Gaps = 30/1095 (3%) Strand=Plus/Plus Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212 ||||||||| ||||| | || |||| ||||||||||| ||||||| ||||||||| || Sbjct 1698158 TTTATCTACGGTAAATTGAATAGCATTGGCGGCTGGTTTTGTTCTCAAATAATACATGCC 1698217 Query 138213 CGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGG 138272 || ||||| || || |||||| || | ||||| || || | | ||||| | || Sbjct 1698218 GGTCTTTAAGCCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGG 1698277 Query 138273 TTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGC 138332 | |||| | ||| || ||||||||||| ||||| ||||||||||| || || || Sbjct 1698278 CTCGGCCACATGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGGTCGGCAGC 1698337 Query 138333 CATGTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATATG 138392 ||| | || | ||| |||||||| || || |||||||||||||| ||||| Sbjct 1698338 CATTTGTATGGTGGTCTTAACGGAAATCTCCCAAACTGTTTTGTATAGATCACGTATATG 1698397 Query 138393 TCGCGGTATTGTTGCAATATTTTGAATGCTCCCG---TTGGCCGCAATGATGCGATTTCT 138449 | |||||| | | || ||| ||| ||| ||| | ||| || |||| | Sbjct 1698398 TTTGGGTATTTCTTCTATGGCTTGTATGGAGCCGCGATTG---GAAATAATTTTATTTTT 1698454 Query 138450 CATGTCATCGTTGTACAGATTCAACTT-GATCAAGTCGTTTATCAGATATCTGTTTATGA 138508 ||| ||||| | | | | |||| || | | || || || | || || || | | Sbjct 1698455 CATTTCATCATCCCATA-AATCAAGTTCGGTTAAATCTTTAAGCAAATGATGATTGACAA 1698513 Query 138509 CCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACG 138568 | | ||||| || | ||| || || | | |||||| || |||| | || ||||| | Sbjct 1698514 CATTGAATTCTCCCGACAAAACACGTCTAGTGTAAATATTAGAGGTGTACGGTTCAAAGG 1698573 Query 138569 ATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAG 138628 |||| ||||| || ||||| || || || | || || ||||| || | | | || Sbjct 1698574 ATTCATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCATTGGGGCTAATAGCAAAG 1698633 Query 138629 AATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGC 138688 |||| |||| ||| || | ||||| ||||| | | ||||||| |||||| || Sbjct 1698634 AATTGCGTACACCATGTTGACTGATTTTCTCCTTCAACTCTGACCAGTTCCACAAGTCTG 1698693 Query 138689 TAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGT 138748 | ||| |||| ||||||||||| || |||| || ||| |||| | |||| ||| | Sbjct 1698694 TGGGTGTTTTATTCCACATATCATATTGTAGTATACCCTTACTTACTGGACAGCCGGGAT 1698753 Query 138749 ACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGT 138808 | | || ||| ||| | || ||||| || || || || | || ||||| | Sbjct 1698754 AAGTTTCATATGTGCCATCTTTTTCGGCCAATTCACAACTAGCTTCCAAAGCGCCATAAT 1698813 Query 138809 AAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGC 138868 ||||||||||| |||||| ||||| | ||| |||| | ||||| || || | Sbjct 1698814 AAATAGTTTCGAAAATCTGTTGATTTAACAAAAATGCCTTTTCACTCTCATAGGGGTAAC 1698873 Query 138869 GGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCA 138928 | | | | || | ||||| | || || || || | || | ||| ||||| |||| Sbjct 1698874 GCATTAAAATCAAAGTATCGGCAAAACCCTGAACACCTATACCAATAGGACGATGACGCA 1698933 Query 138929 GATTTGACGCTTTTGCGGCTTCG---ATAGGATAATAGTTTACATCGATGATTTTGTTTA 138985 ||| ||| ||| |||||| | |||||| |||| | |||||||||||||| | Sbjct 1698934 AATTGGAC---TTTCTAGCTTCGGGCAACGGATAAAAGTTGATGTCGATGATTTTGTTGA 1698990 Query 138986 AAT--TTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCC 139043 || || | | | || || || || || ||| || ||||| | || Sbjct 1698991 GATTCTTGGTA--ATAACTTTTGTAACATTTTTCAATTTTTTGAAATCAAAGGT------ 1699042 Query 139044 GTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGC 139103 || || | ||| |||||| | || | ||| ||||| | || || || || Sbjct 1699043 CTTTTC-----TGGCGT-GACAAACATATTAAGGGCAATGGAGGCCAAATTACAAACAGC 1699096 Query 139104 CACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGT 139163 | || || ||| | ||||| ||||| || | || || || || ||||| || || Sbjct 1699097 TATCTCATCAGGGGCAGAATATTCTACAATCTCTGTGCATAAGTTGCTGCACTTAATGGT 1699156 Query 139164 ACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGT 139223 || | ||||| || |||||||| ||||| |||||||||||||| | |||||| ||||| Sbjct 1699157 GCCAATGTTTTGCTGGTTGCTTTTGCGGTTGCAAGCATCTTTGTACAACATATAGGGTGT 1699216 Query 139224 GCCAGTTTCCACTTG 139238 || ||||| ||||| Sbjct 1699217 ACCGGTTTCAACTTG 1699231 >seq964 Length=291957 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || ||||||| |||| |||||||| ||||| | || || ||| | | Sbjct 215640 ATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTGGAGGTTGAACCTTCG 215699 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||||| || ||| || ||||||||||||||||| || || || |||||| Sbjct 215700 GATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 215759 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||| || || || |||||| |||| ||| | | | || ||||||||| Sbjct 215760 CAGCGTTTGATTTTCGCTGGTAAACAGTTGGAAGATGGCCGCACTTTATCCGATTATAAC 215819 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||| ||||| || || |||||||| ||||| ||||| || || Sbjct 215820 ATTCAAAAAGAATCTACCCTTCACTTGGTATTGCGTTTGCGTGGTGG 215866 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| |||| || | || || ||||| || || | ||||| || | | Sbjct 215412 ATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAAGTTGAGCCTTCT 215471 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || || ||||||||||||||||| || || |||||| Sbjct 215472 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAA 215531 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| ||||| || ||||| |||| || | | | |||| |||||||| Sbjct 215532 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAAT 215591 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||| ||||| ||| | || ||||| || || ||||| || ||| Sbjct 215592 ATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGGC 215639 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| | ||||| ||||| || || | ||||| ||| | || Sbjct 216655 ATGCAGATCTTCGTGAAAACTTTGACCGGAAAAACCATCACTTTGGAAGTTGAACCTTCC 216714 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||||||||| || ||||| || || || || ||| Sbjct 216715 GATACCATTGAAAACGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAA 216774 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||||||||| ||||| |||| ||| | | | | || ||||| ||| Sbjct 216775 CAACGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGCACCCTTTCGGATTACAAC 216834 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || |||||||| || || || || || ||||| Sbjct 216835 ATCCAGAAGGAATCTACTCTCCATTTAGTATTGCG 216869 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| ||||||| | ||||| ||||| || || | ||||| ||| | || Sbjct 216883 ATGCAAATCTTCGTTAAAACCTTGACCGGCAAAACCATCACTTTGGAAGTCGAACCTTCC 216942 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| || ||||| || || ||||| || || || ||||| Sbjct 216943 GATACCATTGAGAACGTAAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCAGATCAG 217002 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||| ||||| ||||| ||||| ||| | | | |||| || || ||| Sbjct 217003 CAACGTTTGATCTTCGCCGGTAAACAACTGGAAGATGGTCGTACCTTGTCTGACTACAAC 217062 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 || |||||||| || || || || |||||| | || | || ||||||| Sbjct 217063 ATCCAAAAGGAGTCCACCCTCCATTTGGTGCTACGTCTTCGTGGAGGCG 217111 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || |||| || || || || || || || || ||| | | Sbjct 215184 ATGCAAATCTTCGTGAAGACTTTAACTGGCAAGACCATCACCCTTGAGGTCGAACCTTCG 215243 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || || || ||||| || || || || || || |||||| Sbjct 215244 GATACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCAGATCAA 215303 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA---TGTCAGATTAT 24880 |||||| | || |||||||| ||||| |||| || || || || |||| |||||| Sbjct 215304 CAACGTCTAATTTTTGCCGGTAAACAATTGGAAGA--CG-GACGCACTTTGTCCGATTAT 215360 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || |||||||| ||||| || || |||||||| | || ||||| || ||| Sbjct 215361 AATATTCAAAAAGAATCTACTCTCCACTTGGTTCTACGTTTGCGTGGTGGC 215411 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || ||||||| ||||||| ||||||||||| | ||||| ||| | || Sbjct 215868 ATGCAAATTTTCGTTAAAACTTTAACCGGCAAAACTATTACCTTGGAAGTTGAACCTTCC 215927 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || |||||| Sbjct 215928 GACACTATTGAGAATGTTAAGGCCAAGATCCAGGATAAGGAAGGTATTCCCCCAGATCAA 215987 Query 24824 CAACGTTTGATCTT 24837 |||||||||||||| Sbjct 215988 CAACGTTTGATCTT 216001 >seq1304 Length=336898 Score = 145 bits (160), Expect = 7e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| |||| ||||| || ||||| | ||||| || | | Sbjct 274400 GATGCAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGAAGTTGAGCCTTC 274341 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | |||| || || || ||||||||||||||||| || || || ||||| Sbjct 274340 CGACACCATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCA 274281 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||||||||||| || || ||||| |||| ||| | | | |||| || || || Sbjct 274280 ACAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAA 274221 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| ||||||||||| || |||| ||||| Sbjct 274220 CATCCAAAAGGAATCCACTTTACATTTGGT 274191 >seq1190 Length=275307 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| ||||| ||||| || || || || || || || | || Sbjct 186673 ATGCAGATTTTTGTCAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAGCCGTCC 186732 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| ||||| || |||||||||||||| || || |||||| Sbjct 186733 GACACTATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAA 186792 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| || || || ||||| |||| ||| | | | || ||||| || Sbjct 186793 CAACGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGCCGTACTCTCTCTGATTACAAT 186852 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 |||||||| ||||| || | |||||||| ||||| Sbjct 186853 ATTCAAAAAGAATCCACTTTGCACTTGGTATTGCG 186887 >seq418 Length=26814 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 98890 TGGCCTCGACGTTACCCAGATCTCCTAAATGTTTGACGGCAGCGTCGGGCGCGCCGTGAT 98949 |||| |||| || |||| ||| |||| |||| | || | |||| || || || | Sbjct 12985 TGGCTTCGATATTGCCCAAATCACCTACATGTCTATTTTCATCTCCGGGGGCACCATGTT 12926 Query 98950 CTTGGCCGAACGGATTAAAATGTTCCCCCGCTGAGGTGCAACCGTTGCTTGTGTCTCCGA 99009 | | ||| | ||||| |||||| || ||||||||||| |||||| | |||| || | Sbjct 12925 CCTTGCCACAGGGATTGAAATGTGGACCAGCTGAGGTGCAGCCGTTGGTATTGTCACCAA 12866 Query 99010 ATTCGTGAATATGAAAACCATGTTGACC 99037 ||||||||| ||| ||||||||| |||| Sbjct 12865 ATTCGTGAACATGGAAACCATGTAGACC 12838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449887966567640