Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq964 107 2e-18 seq629 107 2e-18 seq1190 100 2e-16 seq1304 89.7 4e-13 >seq964 Length=291957 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || || || || ||||||||||| || | ||| |||||| Sbjct 215412 ATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAAGTTGAGCCTTCT 215471 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| || ||| ||||||||||| | || |||||| Sbjct 215472 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAA 215531 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | |||| ||| || ||||| |||| || | | ||| || | ||||| || Sbjct 215532 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAAT 215591 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || |||||||||||||| ||||| |||| ||| | |||| || || Sbjct 215592 ATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGG 215638 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || ||||| ||||| || ||||| ||||| | || || ||| Sbjct 215640 ATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTGGAGGTTGAACCTTCG 215699 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| || || ||||||||||| | ||| |||||| Sbjct 215700 GATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 215759 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | |||| || ||||||||| |||| |||| | | || | | ||||| ||| Sbjct 215760 CAGCGTTTGATTTTCGCTGGTAAACAGTTGGAAGATGGCCGCACTTTATCCGATTATAAC 215819 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||||||||||||||||| | ||| |||| || Sbjct 215820 ATTCAAAAAGAATCTACCCTTCACTTGGTATT 215851 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| || || || |||||||| ||||| ||||| ||| | || || ||| Sbjct 215181 AAAATGCAAATCTTCGTGAAGACTTTAACTGGCAAGACCATCACCCTTGAGGTCGAACCT 215240 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||| | | | || || || ||| || || || || | ||| ||| Sbjct 215241 TCGGATACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCAGAT 215300 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | || |||| ||| |||||||| |||| || | | || || | ||||| Sbjct 215301 CAACAACGTCTAATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTAT 215360 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||||||||||||||| | ||| |||| || | |||| || || Sbjct 215361 AATATTCAAAAAGAATCTACTCTCCACTTGGTTCTACGTTTGCGTGGTGG 215410 >seq629 Length=385807 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 34254 GCCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGAT 34313 ||| ||| ||||||| || ||||| |||| | ||| | | |||||||| || || | Sbjct 239332 GCCATGAAAACCGCAAGCCTTGCATGACTGAGAAATAGTTTGATTTTTAGCCGAAACAGT 239273 Query 34314 GAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATC 34373 ||| ||||| || || || || ||||| || ||||| ||||| || ||||||||||| || Sbjct 239272 GAGATCAGTTTCGGGATTATCGCATTCGGGGCACAAGACAAATTTACGGATGAAACCGTC 239213 Query 34374 AAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 | || || |||| || | | || |||||||| || || ||||| ||||| || Sbjct 239212 TAAAAGATCTTGTAGTTTGGCAGCATCATGGGAGCCATTCACAATGAAACGTTCATT 239156 >seq1190 Length=275307 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||||||||| |||| || || ||||| || | || ||||| Sbjct 186672 AATGCAGATTTTTGTCAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAGCCGTC 186731 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| ||| | | | || ||| |||||| ||||||||||| | || ||||| Sbjct 186732 CGACACTATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCA 186791 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||| | | |||| || || ||||| |||| |||| | | || | | |||||||| Sbjct 186792 ACAACGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGCCGTACTCTCTCTGATTACAA 186851 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 |||||||||||||| || |||||| |||| || Sbjct 186852 TATTCAAAAAGAATCCACTTTGCACTTGGTATT 186884 >seq1304 Length=336898 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || |||||||||||||| || || ||||||||| | ||| |||||| | Sbjct 274399 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGAAGTTGAGCCTTCC 274340 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || || || ||||||||||| | ||| |||||| Sbjct 274339 GACACCATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 274280 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | || |||||||| |||| |||| | || || | || |||||| Sbjct 274279 CAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAAC 274220 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || ||||| ||||| || || || |||| Sbjct 274219 ATCCAAAAGGAATCCACTTTACATTTGGT 274191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412832981028509