Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28]
1,713 sequences; 434,128,924 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq964 150 3e-31
seq1190 111 2e-19
seq1304 107 3e-18
>seq964
Length=291957
Score = 150 bits (166), Expect = 3e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | ||||||||||| || ||||||||||| | || || |||| | |
Sbjct 215641 TGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTGGAGGTTGAACCTTCGG 215700
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
||||||| ||||||| ||| |||||| ||| |||||||| ||||| || |||||||
Sbjct 215701 ATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAAC 215760
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| | | ||||| || |||||||| || || ||| | || ||| | |||||||| |
Sbjct 215761 AGCGTTTGATTTTCGCTGGTAAACAGTTGGAAGATGGCCGCACTTTATCCGATTATAACA 215820
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259
| ||||||||||| || | || || ||||| || || | || ||||
Sbjct 215821 TTCAAAAAGAATCTACCCTTCACTTGGTATTGCGTTTGCGTGGTGGTA 215868
Score = 149 bits (164), Expect = 1e-30
Identities = 163/217 (75%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | || ||||| || || ||||| || ||| | || || || | | |
Sbjct 215413 TGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAAGTTGAGCCTTCTG 215472
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| ||||||| ||| |||||| ||| |||||||| || ||||| |||||||
Sbjct 215473 ATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAAC 215532
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | | |||||||| || |||||||| || || | || || | ||||||||||
Sbjct 215533 AACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAATA 215592
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATT 146248
||||||||||||| || | ||||| |||||||| ||
Sbjct 215593 TACAAAAAGAATCTACATTGCATTTGGTATTACGTTT 215629
Score = 140 bits (154), Expect = 5e-28
Identities = 161/217 (74%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | || || ||||| || || || || || |||| || |||| | |
Sbjct 215185 TGCAAATCTTCGTGAAGACTTTAACTGGCAAGACCATCACCCTTGAGGTCGAACCTTCGG 215244
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| ||||||| || |||||| ||| ||| || || ||||| || |||||||
Sbjct 215245 ATACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCAGATCAAC 215304
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | || |||||||| ||||||||||| || || | || || | ||||||||||
Sbjct 215305 AACGTCTAATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTATAATA 215364
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATT 146248
| ||||||||||| ||| |||| || || |||| ||
Sbjct 215365 TTCAAAAAGAATCTACTCTCCACTTGGTTCTACGTTT 215401
Score = 125 bits (138), Expect = 1e-23
Identities = 156/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | ||||| || || |||||||| || ||| | || || |||| | ||
Sbjct 216656 TGCAGATCTTCGTGAAAACTTTGACCGGAAAAACCATCACTTTGGAAGTTGAACCTTCCG 216715
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||| || || ||| || ||| ||| ||||| ||||| || || ||||
Sbjct 216716 ATACCATTGAAAACGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAAC 216775
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | | || ||||| ||||||||||| || ||| | || | | ||||| || |
Sbjct 216776 AACGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGCACCCTTTCGGATTACAACA 216835
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245
| || || ||||| ||| ||||||||||||| ||
Sbjct 216836 TCCAGAAGGAATCTACTCTCCATTTAGTATTGCG 216869
>seq1190
Length=275307
Score = 111 bits (122), Expect = 2e-19
Identities = 153/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | ||||| |||| || || || || ||| |||| || || | ||
Sbjct 186674 TGCAGATTTTTGTCAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAGCCGTCCG 186733
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| |||||| ||||||| ||| || || || |||||||| |||||||| |||||||
Sbjct 186734 ACACTATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAAC 186793
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | | ||||| || || |||||||| || ||| | || | | ||||| ||||
Sbjct 186794 AACGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGCCGTACTCTCTCTGATTACAATA 186853
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245
| ||||||||||| ||| | || || ||||| ||
Sbjct 186854 TTCAAAAAGAATCCACTTTGCACTTGGTATTGCG 186887
>seq1304
Length=336898
Score = 107 bits (118), Expect = 3e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | ||||| ||||| || || || ||||| | || || || | | ||
Sbjct 274398 TGCAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGAAGTTGAGCCTTCCG 274339
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| ||||||| || ||||| ||| |||||||| || || || |||||||
Sbjct 274338 ACACCATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAAC 274279
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | | || || || ||||||||||| || ||| | | || || | || || || |
Sbjct 274278 AACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAACA 274219
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240
| ||||| ||||| ||| | ||||| |||
Sbjct 274218 TCCAAAAGGAATCCACTTTACATTTGGTA 274190
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 786149566211960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |