Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_023568.1 Length=246964 Score E Sequences producing significant alignments: (Bits) Value seq253 179 6e-40 >seq253 Length=360942 Score = 179 bits (198), Expect = 6e-40 Identities = 535/811 (66%), Gaps = 32/811 (4%) Strand=Plus/Minus Query 187030 CGGCGATATTCATTTTCATGACCTTGACTACAGCCCATTATTCCCGCAATTCAACTGTAT 187089 ||| || ||||||| ||| || || || || ||||| ||||| || |||||||| Sbjct 105638 CGGTGAAATTCATTATCACGATCTCGATTATGCGCCATTTTTCCCCATGTTTAACTGTAT 105579 Query 187090 GCTTATTGATATCAAAGGCATGTTTG--AAGGCGGTTTCAAAATGGGTAATGCTGAAATC 187147 ||| |||||| | |||||||||| || | ||||| |||||||||||||| ||||| Sbjct 105578 GCTGATTGATCTTGAAGGCATGTTAACTAATG-GGTTT-AAAATGGGTAATGCCGAAATA 105521 Query 187148 GAAGAACCAAACAGTATTAGCACTGCTGCCACTGTTGTAACTCAGATTATTCAGCAAGTA 187207 || || || ||| |||||| || | || | | || ||||| |||||| Sbjct 105520 GAGCCTCCTAAATCAATTTCCACTGCCACCGCAGTGACAGCCCAAATTATCGCTCAAGTA 105461 Query 187208 AGTAGCCATATCTACGGCGGTAACACGATCAATAGAATCGACGAAGTCCTAGCACCTTAT 187267 ||||||||| || || || | ||| ||||| | || || ||| |||| || |||||| Sbjct 105460 GCTAGCCATATTTATGGTGGCACCACCATCAACCGCATTGATGAAATCCTTGCTCCTTAT 105401 Query 187268 GTTCGTAAGTCA--TATTATAAATGGCTCGAAGTAGGTCGCGAAGAACATCCCGACTCTG 187325 || | | ||| ||| | ||| || || || ||| || | | | || Sbjct 105400 GTCCACA--TCAGCTATGAAAAACATCTAAAAACAG----CGATCAA--TTGGGGCATTG 105349 Query 187326 A---TTCTAAAGCTGCTATCTTTGCA-CGAAAGCGTGTTGAAAAGGAAACGTTCGATGCA 187381 | | | |||| ||||| | | | ||| || |||| ||| | |||||| Sbjct 105348 AAGATGCGAAAG--GCTATGCTGATAGCCAAACCG-----AAAAAGAATGTTACGATGCC 105296 Query 187382 TTCCAGACGTTTGAATATCAAGTCAATACGATGCAGACTTCAAACGGTCAGACACCATTC 187441 ||||| | ||||||| |||| || || |||| || | || ||||| || || ||| Sbjct 105295 TTCCAATCCCTTGAATACGAAGTGAACACACTGCATACCGCCAATGGTCAAACCCCCTTC 105236 Query 187442 ACGACAATCAACTTCGGGTTAGGTACGTCGTGGGAAGAAAAACTTATTCAAAAAAGTATT 187501 || | || || ||||| || ||| |||| | | || ||| || ||| Sbjct 105235 GTAACCTTTGGGTTTGGTTTAGGCACATCGCAAGAAGCACGCTTGATCCAACAATCCATT 105176 Query 187502 CTTCAGAATCGTATTGCAGGTCTAGGTAAGACTAAGAAAACTGCTATTTTCCCTAAGCTT 187561 || | || ||||| || || ||||||| | | |||||||| |||||||||| | Sbjct 105175 CTAAAAAACCGTATCGCTGGGTTAGGTAAAAATCGTAAAACTGCCGTTTTCCCTAAATTA 105116 Query 187562 GTTTTCACATTGAGAGACGGCGTGAACCTAAAAGAAGGCGACCCGTGCTACGCCATCAAA 187621 || || | | | | | ||| | || | || | || || || ||| | |||||| Sbjct 105115 GTGTTTGCTATTAAAAAAGGCCTTAATCACCAATATGGTGATCCTAACTATGATATCAAA 105056 Query 187622 AAGTTAGCTCTTGAATGTGCAAGTAAGCGTATGTACCCAGACATTTTGAACTATGACAAA 187681 ||||||| | || ||||| || || || ||||| || ||||| || |||||||||||| Sbjct 105055 CAGTTAGCATTAGAGTGTGCGAGCAAACGCATGTATCCCGACATCTTAAACTATGACAAA 104996 Query 187682 CTAGTTGAAACGACTGGTGGGTTTAAGTCTCCAATGGGCTGTCGCTCATTCTTGGGTGAC 187741 | || || || || |||||| | ||||||||||| ||| ||||| |||| | Sbjct 104995 GTTGTCGATGTAACGGGCTCGTTTAAAACGCCAATGGGCTGCCGCAGCTTCTTAGGTGTC 104936 Query 187742 TGGAAGAACGAAGATGGTGAAACGGTATTC--GATGGTCGTAATAACTTAGGCGTCGTCT 187799 | | ||| ||| |||| || |||| ||||| |||||||| ||||| ||| | Sbjct 104935 T--ACGAA-GAAAATGGCCAA--CAAATTCATGATGGCCGTAATAATTTAGGTGTCATTA 104881 Query 187800 CAATCAATATCCCGCGTATTGCTATTGAAGC 187830 | || | ||||||||||| |||||||| Sbjct 104880 GCCTTAACCTGCCGCGTATTGCCATTGAAGC 104850 Score = 96.9 bits (106), Expect = 5e-15 Identities = 176/253 (70%), Gaps = 6/253 (2%) Strand=Plus/Minus Query 188159 ACAGATGCATGGAAAGAACTGACGGGCTACGGTTTCAGTCTGTACAGTACACCAAGTGAA 188218 || |||| |||||||| | || ||||| ||||| || || || || || ||||||||| Sbjct 104524 ACCGATGAATGGAAAGCAGAAACAGGCTATGGTTTTAGCCTTTATAGCACCCCAAGTGAA 104465 Query 188219 TCGCTGTGTGATCGTTTCTGTCGTCTCGACCAAGAGAAATACGGTGTCATTACAGGTATC 188278 ||||||||||||||||||| || || | | | || || || |||| | Sbjct 104464 AACTTGTGTGATCGTTTCTGTCGCCTTGATACTGCTGAGTTTGGGGTTATCGAAGGTGTT 104405 Query 188279 AATGACAAAGACTATTACACAAACTCGTTT-CACTTAGACGTGTTCAAGAA--AGTTAAC 188335 | || |||| || ||||| || | |||| ||| | || |||| || || |||||| Sbjct 104404 ACGGAAAAAGGTTACTACACCAA-TAGTTTCCACCTTGA--TGTTGAAAAACGCGTTAAC 104348 Query 188336 CCATTTGAGAAAATTGATTTTGAAGCTGCATACCCAATTCATGCAAACGGTGGTTTCATC 188395 |||| || || |||||||||||| ||||||| || ||||| || ||||| || Sbjct 104347 CCATACGATAAGATTGATTTTGAACAGCCATACCCTGCTCTCGCAAATGGCGGTTTTATT 104288 Query 188396 TGTTATGCTGAGT 188408 || || | |||| Sbjct 104287 TGCTACGGCGAGT 104275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 790139880767520