Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_023579.1 Length=75568 Score E Sequences producing significant alignments: (Bits) Value seq410 174 8e-39 >seq410 Length=72445 Score = 174 bits (192), Expect = 8e-39 Identities = 279/401 (70%), Gaps = 0/401 (0%) Strand=Plus/Minus Query 31332 GATGGTTGGCATTATCTGTTCGGTAACTTCAACCTCGGTGGAACGTTATCAGGGCGGTTA 31391 ||||| |||||||| ||||||| | |||||| | |||||||| || || | || Sbjct 62017 GATGGATGGCATTACTTGTTCGGATATTTCAACTTAGGTGGAACCAAGTCTGGTAGATTG 61958 Query 31392 AGCTCATCCGATCCAAACCTGCAAAACCTGCCAGCGAAAGAGAATAAATACTCCAAGCTG 31451 || ||||| | || ||| | |||||| | ||| | | | | ||| || | Sbjct 61957 AGTTCATCTAACCCGAACTTACAAAACATCCCATCAAGCCGTAGTCCGTACAGTAAAGTA 61898 Query 31452 ATCAAGTCTTGCTTCCAAGCTCCACCGGGTTGGATGTTCTGTGGGCTGGACTTTGCAAGT 31511 ||||| |||||| ||| || || ||| |||| ||| || ||||||| ||| Sbjct 61897 ATCAAACGTTGCTTTAGAGCACCGAAAGGCTGGCTGTTTACTGGACTAGACTTTGATAGT 61838 Query 31512 CTGGAAGACAGGATCTCTGCCGTTACCACTAAAGACCCAAATAAACTGAAGGTGTATACC 31571 || |||||||| || || || | |||||||||||||| |||||||| ||||||||||| Sbjct 61837 CTTGAAGACAGAATATCCGCTTTAACCACTAAAGACCCTAATAAACTTAAGGTGTATACA 61778 Query 31572 GATGGTTATGACGGTCACTGTCTTCGTGCTTATGCTTACTTCGGTGAGCAGATGCCAGAC 31631 ||||||||||| || |||||| | ||||||| ||||||| || | |||||||| Sbjct 61777 GATGGTTATGATGGACACTGTTTGCGTGCTTTCTATTACTTCAAAGACCGTATGCCAGAT 61718 Query 31632 ATTGTGGATACTGTAGAGTCTATCAACTCCATTGAGAAGAAGTACAAAGCTCTCCGTGGT 31691 ||||| || |||||||| ||| ||| || | | || ||| | | || Sbjct 61717 ATTGTTGAAACTGTAGATAGTATTAACAGTATCGCTGACAAATACCCTGATGAGCGACAA 61658 Query 31692 GACAGTAAGGCACCAACATTCGCACTGACTTATCAGGGTAC 31732 || |||||| |||| |||||||| | |||||| |||||| Sbjct 61657 GATAGTAAGTCACCTACATTCGCTTTAACTTATTTGGGTAC 61617 Score = 167 bits (184), Expect = 1e-36 Identities = 482/729 (66%), Gaps = 27/729 (4%) Strand=Plus/Minus Query 72526 AAACGCATTTTGTTGTCCGGTTACTTCGATACCGACAGCTTGTGGTTTGTACTGCTGGCA 72585 |||| || |||| || || |||||||| | ||| |||| ||||| || || || Sbjct 22777 AAAC-CACTTTGCTGACCTGTTACTTCTACACCAACAGACTGTGGGTTATAAATTTGAAC 22719 Query 72586 CAGTCTGAACAGGTCATTAATATTCTTGTCCATAGTCTGACGTTTAACAATGCCATCGAC 72645 ||||||||| | ||||||| || |||||| || || ||| ||||| || Sbjct 22718 CAGTCTGAATAAATCATTAAGGTTAGCGTCCATCTCTTGTTTCTTGCAAATACCATCTAC 22659 Query 72646 TAAGAACCAGTCACCATTGGAGTTAAAGCCCCACACAAAGATAACCGAGTAGTCGGCTGT 72705 ||| |||| | ||| | ||| | | |||| |||| || || |||||| || | Sbjct 22658 CAAGTACCAATTACCTTGATAGTCATACGCCCAAACAATAATGACACTGTAGTCAGCACT 22599 Query 72706 CTGTTTGGCTGAGGTGGCAAAGTCAGTGGTGATGTAGAAGTTGAATGTCTG---CTGGTT 72762 || ||| | ||| |||||||| ||||| ||||| | | | |||| ||| | Sbjct 22598 CTCTTTAGAAGAGACAGCAAAGTCTGTGGTAATGTAATAATGATAATTCTGTAACTGTGT 22539 Query 72763 CTCGA---TTAACAGTGACCGGTCATACCAACGCATATCC--GAATCCTGAACCAGACGT 72817 | || || | || || |||| ||||| || || |||| || | Sbjct 22538 CATGAGATTTGTACGAGA---GTAATACTG-----TATCCATGACTCTTGAATCATTCTC 22487 Query 72818 TCCTCTTCAGAGGTAATGCGAAGCATCAGCTCCTGCATGAAGCCTGAT--ACCTTGCCT- 72874 || || ||||||| ||| || | ||| || || || | || |||| | | ||| Sbjct 22486 TCTTCATCAGAGGCAATACGTAACATAAGTTCTTGGTTAAA---TGATTTAATTCGCCCA 22430 Query 72875 GTCTTGACTGCCATGTCCCACTGAGCT-TCGATGTACTCGTAAGGGAAACGGTCTTCCCA 72933 || | || |||| || |||| ||| | | | || || | ||| || || ||| Sbjct 22429 GTTCTCACAGCCAACTCATACTG-GCTCTTAACAAATTCATACGAGAATCGCTCAGGCCA 22371 Query 72934 TGCACCGACAAACTCTTCACGGGTACAAGGCCAGCGTTCACAGACAGGCCATACGTTTAC 72993 |||||| ||||| || | |||||| |||| ||||||| ||| | ||||| || Sbjct 22370 TGCACCAACAAATTCATGTTCTTCACAAGGGAAGCGCTCACAGATAGGGTAAACGTTAAC 22311 Query 72994 ATCCCATGCACCTGATTCAACGGCTTCGATA-AGAATGTCGTCTTTGTTAAATGGCGTAC 73052 | ||| | ||||| |||||||| || ||| |||| || | || ||||| ||||||| Sbjct 22310 GTACCAACCGCCTGACTCAACGGCCTC-ATATAGAACATCATTCTTATTAAAAGGCGTAC 22252 Query 73053 CATTGAAGATTACCTTTCTCTTCGTTGGATCCATTGCGTGGTTCACGCCTTTATATACGG 73112 |||| |||| | |||| |||| ||||| || | || |||| || || ||||| || | Sbjct 22251 CATTAAAGACAATCTTTTTCTTTGTTGGGTCAAGGGCATGGTCAACACCGTTATACACAG 22192 Query 73113 TGTCCTTAATGGCTTCCATTGAGACACGGGATTTGGAGTCATCATCTGATACTAAGTCAT 73172 |||||||||| ||||||||| || || | || || || |||||||||| Sbjct 22191 TGTCCTTAATCGCTTCCATTTCTGTTTTAGACTTAGCATCCTCGTCACTCACTAAGTCAT 22132 Query 73173 CCAGCACACAGAGCACAGGACGCTTACCAAAAATCTTCGTACCACGAAGACCTGTCTTAG 73232 | || ||| || ||||||||||||| | || || ||||||| | ||||||||||| Sbjct 22131 CAAGTACAGCCAGGGTAGGACGCTTACCATACATTTTATTACCACGGATACCTGTCTTAG 22072 Query 73233 CACCGAACA 73241 |||| |||| Sbjct 22071 CACCAAACA 22063 Score = 154 bits (170), Expect = 7e-33 Identities = 280/408 (69%), Gaps = 4/408 (1%) Strand=Plus/Minus Query 61335 CTTCACCAGTGATTTCATCATCGGCAGTTGCAGCACCTGCATACAGAACAGTACCAGCAG 61394 |||||||||||||||||||||| ||| |||| ||| ||| | |||||||||| Sbjct 34705 CTTCACCAGTGATTTCATCATCTTTCAATGCCACACCAGCAAACATGATAGTACCAGCAC 34646 Query 61395 CAGCCAGCAGGTCTTTTTGCAGAACAGCTTCGGTCATCTGTACAGCACCGTTCATCAGCT 61454 | | || || ||| || | |||| || || ||||| ||||| | | ||| | Sbjct 34645 CTTGTAACAACTCAATTTCGAGCATGTCTTCAGTGATTTGTACCGCACCTGTTACCAGTT 34586 Query 61455 CGGTAGACAGGTGATCCATCAGGCCATCG--TCAGAGTCGAAGTCCATAGACTCTTGAGT 61512 | || || | |||||| ||||| |||| || ||||| ||||| |||| ||| Sbjct 34585 CACGCTGCATATGTTTCATCAG--CATCGGGTCAGTATCAAAGTCGATAGAGTCTTTAGT 34528 Query 61513 GAACTCATGGAAGAAACCGAACTTGTGAATTGAACCTTCACGTTCCAGACGGGTGAAACC 61572 ||||| |||||| ||| | || ||| ||||||| |||||||||| ||| Sbjct 34527 CCACTCACGGAAGATACCCATTTTAGAAATGGAACCTTTGATTTCCAGACGGACAGTACC 34468 Query 61573 AACACGGTTAACACGGCCACCATTTTCGGTCAGCAGTGGCAGCTTGTTGGTGATAGTACC 61632 ||||||||||||||| ||||| | ||| || |||| || | ||| |||| Sbjct 34467 AACACGGTTAACACGACCACCTTCTTCACCCATGTACGGCATTTTATCAAGGATTTTACC 34408 Query 61633 AATGTCTTTACTGGAGCCATACAGGTTCCCGTTAGCAATGGTCACACCAGAAGCATCGAT 61692 || ||||||| || || || | ||| || | || | || |||||||||||||| Sbjct 34407 AACGTCTTTAGAAGAACCGTATAAGTTACCATCTTTGATTTTAACGCCAGAAGCATCGAT 34348 Query 61693 GCCCTGATCGTTAATGTTACGGTCGTCCAGCAGTGGTACGTATTCGTA 61740 || || ||||| | ||||||||| ||||||| ||| | ||| | ||| Sbjct 34347 ACCTTGGTCGTTCACGTTACGGTCATCCAGCAATGGAATGTAGTGGTA 34300 Score = 98.7 bits (108), Expect = 5e-16 Identities = 175/251 (70%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 36500 ATGGCTGACCACGAAGAAATTCGTAAAGCTGAAATGTCTCACCGTTACTTCAAAGCTCTG 36559 ||| | || || |||||||| ||||| |||||| | || ||||||||||| || | Sbjct 56382 ATGACGGAGCATGAAGAAATCTTAAAAGCAGAAATGGCCCATCGTTACTTCAAGACTATT 56323 Query 36560 AAGTTAGCCGGGGCGTATGCCTTTGTTGATGAAAGCAA--TGAAGTGGAAATGTCCCATC 36617 || ||||| || || || || ||| ||| | || || |||||| | ||| ||| Sbjct 56322 AAATTAGCAGGTGCTTACGCATTTATTG--CACAGGAACCAGAAGTGAAGATGGAGCATT 56265 Query 36618 TGCTTTCTGCAATCCTGCTGGTAGAGGAGTCTGGTGCAGC-CTTCCAGAAGATCCTCACT 36676 ||| |||||| || ||| || || || || |||| ||| ||| || | ||| | | | Sbjct 56264 TGCATTCTGCTATTGCGCTTGTGGAAGAATCAGGTGAAGCGCTTAAAGCA-ATCATGAAT 56206 Query 36677 CGTGAGAAAGCCTATATGAAGTTAGCCAAGTACATTGCTGCTGTTGATGGCGATGTAACT 36736 ||||| ||| | || ||||||||| |||| |||| | |||| | ||||| ||| Sbjct 56205 CGTGATAAACCTTACGAGAAGTTAGCGAAGTTTGTTGCAACAGTTGGCCGTGATGTTACT 56146 Query 36737 CATGCTGACTT 36747 | |||||||| Sbjct 56145 AACGCTGACTT 56135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 241687754134097