Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_023589.1 Length=71629 Score E Sequences producing significant alignments: (Bits) Value seq410 232 3e-56 >seq410 Length=72445 Score = 232 bits (256), Expect = 3e-56 Identities = 695/1052 (66%), Gaps = 33/1052 (3%) Strand=Plus/Minus Query 19623 CTCTTCCGGGAAGTACATCTTACCAGCTTTGAACCATGGAACTACCAGGTTAAAGCGTGA 19682 ||||| || ||| | ||||| |||| ||| |||| || ||| || | |||| Sbjct 22943 CTCTTTAGGAAAGAATATCTTTCCAGTAGCAAACAATGGCACAGCCATCTTCATACGTGT 22884 Query 19683 CAGCTTAGAAGTTACAGGACGGATGCCTGGCT---TACCACCTTCAGAGGATGCAAAGTT 19739 ||| ||| || ||||| | ||||| || | ||| || ||||| ||||||| Sbjct 22883 CAGTTTATCTGTCACAGGTCTAATGCCCGGTTCTTTACGACTACCAGAGCGTGCAAAGGA 22824 Query 19740 AAAGAAGACATTACGGTTAATCATTTCTT--TCTGAAGGAGTGAAA----TGAATCCATT 19793 |||| | | |||| |||| |||| ||| | | | || |||| ||| | Sbjct 22823 AAAGTATA------GGTTCCTCATCTCTTGTTCTCTACGTATCCAACTAATGAAACCACT 22770 Query 19794 TTGCTGTCCTGTGATTTCGACCCCAACGTTTTGTGGTTGGTATTCTTGAACCAGACGGAA 19853 |||||| ||||| | ||| || ||||| ||||| | || ||||||||| | ||| Sbjct 22769 TTGCTGACCTGTTACTTCTACACCAACAGACTGTGGGTTATAAATTTGAACCAGTCTGAA 22710 Query 19854 CAGGTCATCAAAGTTTTTATCCATAAGCTGACGATTAGCCACACCATCAATCCAGAACCA 19913 | |||| || ||| ||||| || || | |||||| | | || |||| Sbjct 22709 TAAATCATTAAGGTTAGCGTCCATCTCTTGTTTCTTGCAAATACCATCTACCAAGTACCA 22650 Query 19914 ATCTCCATTAGAACTATAAGCCCAAACTGATATGACACTGTAGTCACTGGTCTGTTTCTC 19973 || || | | | ||| |||||||| ||||||||||||||| ||| ||| Sbjct 22649 ATTACCTTGATAGTCATACGCCCAAACAATAATGACACTGTAGTCAGCACTCTCTTTAGA 22590 Query 19974 CGAAGTAGCAAAGTCGGTTGTGATGTAATAGTTGTAG--CAGGACTTCATCCTTAACAGT 20031 || ||||||||| || || |||||||| | || | | | | | | | | | Sbjct 22589 AGAGACAGCAAAGTCTGTGGTAATGTAATAATGATAATTCTGTAACTGTGTCATGAGATT 22530 Query 20032 TGCT-GTCTGCTATACCATCTAATTTCACTA-TCCTGAACCAGTCTCTCATCTTCGGAGC 20089 || | | |||| | || | || | || |||| || |||||| || || ||| Sbjct 22529 TGTACGAGAGTAATAC--TGTA--TCCATGACTCTTGAATCATTCTCTCTTCATCAGAGG 22474 Query 20090 TAATACGGAGCATAAGTTCCTGATAGAAGCCTGCCAGCTTACCAGTCTTAACTGCCATAT 20149 |||||| | ||||||||| || | || | | ||||| | || |||| | Sbjct 22473 CAATACGTAACATAAGTTCTTGGTTAAATGATTTAATTCGCCCAGTTCTCACAGCCAACT 22414 Query 20150 CGTATTGAGCTTTGATGTAAT-CGTAAGAGAATCGGTCATCCCATGCACCCTGAAATTCT 20208 | || || ||| | | ||| | || |||||||| ||| ||||||||| |||||| Sbjct 22413 CATACTG-GCTCTTAACAAATTCATACGAGAATCGCTCAGGCCATGCACCAACAAATTCA 22355 Query 20209 TCC-CTACTACAAGGAAACTTCTCACACACAGGCCACACGTTTACATCCCATGCACCAGA 20267 | || | |||||| || |||||| | ||| | ||||| || | ||| | || || Sbjct 22354 TGTTCTTC-ACAAGGGAAGCGCTCACAGATAGGGTAAACGTTAACGTACCAACCGCCTGA 22296 Query 20268 CTCAACTGCTTCAATGATAATGTCTTCCTTATTAAAGGGAGTACCATTGAAAATTACTTT 20327 |||||| || ||| | || || | ||||||||| || |||||||| || | | || Sbjct 22295 CTCAACGGCCTCATATAGAACATCATTCTTATTAAAAGGCGTACCATTAAAGACAATCTT 22236 Query 20328 ACGACGGGTCGGGTCAAGAGCATGGTTCACACCTTTATAAACAGTATCTTTAATAGCTTC 20387 || |||||||| ||||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 22235 TTTCTTTGTTGGGTCAAGGGCATGGTCAACACCGTTATACACAGTGTCCTTAATCGCTTC 22176 Query 20388 CATGCTAGTCTTGGAGTTAGCATCCCCGTCACTAATCAAGTCATCCAGTACACAGAGTGT 20447 ||| || || || ||||||||| ||||||| | |||||||| |||||| || || Sbjct 22175 CATTTCTGTTTTAGACTTAGCATCCTCGTCACTCACTAAGTCATCAAGTACAGCCAGGGT 22116 Query 20448 TGGACGCTTACCATATATCTTCGTACCACGAAGACCTGTCTTAGCACCAAA-TAGCTTAA 20506 |||||||||||||| || || ||||||| | |||||||||||||||||| | | ||| Sbjct 22115 AGGACGCTTACCATACATTTTATTACCACGGATACCTGTCTTAGCACCAAACAAACCTAA 22056 Query 20507 CACCAAGTCGATGCCCCTCTACATT-ACGAAACTCCAATA-GGTTATCCGTAAAGGTAGC 20564 |||| ||| || || |||| ||| |||| ||||| | ||||||||||| | || Sbjct 22055 -TCCAAACTTATGACCATCAGCATTCACG-AACT-CAATACGCTTATCCGTAAACTTCGC 21999 Query 20565 TTCGGGTATCCATTGCTGAAGGAACTCACTATTCTTGTAACGAAACTCAATGTTCTTACG 20624 |||| | ||| ||||||| || || | ||| | || | |||||| | Sbjct 21998 CACGGGCACGAATTTCTGAAGGGTCTGGCTTTGTAAGTATCTGTTTTCTAAGTTCTTTCT 21939 Query 20625 TGCAGACTTAGCACCGTTATCCATTGAGTCAG 20656 | ||| || ||||| ||||||||||||| Sbjct 21938 TAGGTTCTTGGCTCCGTTGTCCATTGAGTCAG 21907 Score = 140 bits (154), Expect = 1e-28 Identities = 655/1016 (64%), Gaps = 33/1016 (3%) Strand=Plus/Minus Query 6155 GCAACAGTCTTAATCAGAGCCAGACGTTCTGGGCGTTTAACCAGGATACCGTAGTACCAC 6214 ||||| || ||||||| |||| ||| || | ||| || | |||||||| ||||| Sbjct 35300 GCAACTGTTTTAATCATCGCCAAACGCTCAGAGCGAAGAATTAACATACCGTACCACCAC 35241 Query 6215 TTGATAGAACTGAAGCCAGTTTCACCATACGGGTCATTACGGTCAGCAGTTTCTTTACCC 6274 ||||| |||| ||||||| |||||| ||||||| |||||||||||||| || || Sbjct 35240 AACATAGAGGTGAATCCAGTTTGACCATATGGGTCATGACGGTCAGCAGTTTGTTCCCCA 35181 Query 6275 GGCATCTTAGTCAT-GATAGTGAACTTA-ACAGACTTACCATCAGTCTGGAAGCCAATGG 6332 |||| ||||| || || | ||||||| || ||| || ||| | ||||||| | Sbjct 35180 GGCACTTTAGTAATTGACTG-GAACTTATACTGACGG-CCTGCAGCTTCAAAGCCAACAG 35123 Query 6333 TAGAGAAGGAGTCGTCACCAACTACCAGCATCGGGAACACGTCGTAGTGTTCCTGACCAT 6392 ||| || || | ||||||| |||| ||| ||||| | || || | || | | | Sbjct 35122 TAGTAAATGAACCACCACCAACAACCATCATTGGGAAGATATCATATTTATCGTCAGTGT 35063 Query 6393 CAACCATAGAAGAGCGATAGCCTGGGTTATCAGTAGCCTGTGCACCAGCACCTGCCCAAT 6452 | | ||||| || || || |||| || || ||||| ||| || | | Sbjct 35062 TA-CGATAGAT-AGT-AT---CTTTGTTA---GTTACCGCAGCACCTTTACCAGCAAAGT 35012 Query 6453 GCA--GCATCTCAGGAACCTGGATAATACGGAACTTATCAATACAACCGATTTCACCATT 6510 | |||| || | || | |||||| ||| | |||| | |||||||| Sbjct 35011 GTTTCGCATTGAAGTTCACA--ATTACACGGAATGGGCCAACAGAACCAACTTCACCATG 34954 Query 6511 CATCA-ATGTACCAGCATCAGCATAGTGCTGAACTTCGATGAATGCTTTGTTACCGAACA 6569 | ||| ||| || |||||||||| || || || || ||| ||||| || Sbjct 34953 TGCGATATG-ACCTGCCGCAGCATAGTGTTGTACAGGAATAAACGCTGGATTACCAAAGT 34895 Query 6570 GGTCTTTCATCGCTTTCAGTTCTGGA-ACCAGTTCAGAACCAACGTACATTACACGAGTA 6628 |||||||| | | | | | | | |||||| ||| | ||||| ||||| | Sbjct 34894 TATCTTTCAT-GTTACGAATAGTAGTCAGCAGTTCGTTACCGATATACATATAACGAGCA 34836 Query 6629 CCACCAAGTACTTTG-GTATCTGTCAGTTTAGAACCAGTGATGATAGTAGTCTGGGTCGG 6687 || | || ||| ||||| || | | |||||| |||| | ||| | || Sbjct 34835 G-ACGGAATAGTTTTCGTATCAGTGAATGGAGAACCTTTGATAACGTCAGTGTTACGTGG 34777 Query 6688 GGTACGGTTCTCAGTAAGAATCTGGTCAAGACGCATCAGGTTCTTATAAGAAACTACGGA 6747 |||||||| || ||||||| | || | ||| ||| |||| ||||| |||| | || Sbjct 34776 TGTACGGTTTTCGTTAAGAATATCATCTAAACGTTGCAGATTCTCATAAGTAACTTCAGA 34717 Query 6748 CGGGGTAGAGC--CTTCACCGGTGATGGTAGCATCAGAAACAGCAGCACCTGCGTACAGT 6805 | || || ||||||| ||||| | |||| | || |||| || ||| Sbjct 34716 --GATTACCGCACCTTCACCAGTGATTTCATCATCTTTCAATGCCACACCAGCAAACATG 34659 Query 6806 ACAGTACCAGCAGCAGCCAGCAGGTCTTTCTGGAGAACAGCTTCAGTCAACTGTACAGCA 6865 | |||||||||| | | || || | | ||| | ||||||| | ||||| ||| Sbjct 34658 ATAGTACCAGCACCTTGTAACAACTCAATTTCGAGCATGTCTTCAGTGATTTGTACCGCA 34599 Query 6866 CCGTTCATCAGTTCACGTGATAGATGCTCTTTCAGCTGGTCATCAGAATCGAAGTCCAGA 6925 || | | ||||||||| | ||| | ||||| |||| ||| ||||| | | Sbjct 34598 CCTGTTACCAGTTCACGCTGCATATGTTTCATCAGCATCGGGTCAGTATCAAAGTCGATA 34539 Query 6926 GACTCTTGGGTAAATTCATAGAAGAAGCCGAACTTATGAATAGAACCTTCACGAGCTAAA 6985 || |||| || | ||| ||||| || | ||| ||| ||||||| | | | Sbjct 34538 GAGTCTTTAGTCCACTCACGGAAGATACCCATTTTAGAAATGGAACCTTTGATTTCCAGA 34479 Query 6986 CG---AGTAAAGCCTACACGGTTAACACGACCACCATTCTCTGACAGCAGAGGAAGTTTA 7042 || |||| || |||||||||||||||||||| | || || || | |||| Sbjct 34478 CGGACAGTA---CCAACACGGTTAACACGACCACCTTCTTCACCCATGTACGGCATTTTA 34422 Query 7043 GAGGTGATGTTACCAACGTCTTTGGAAGAACCGTACAGGTTACCATTAACAATGGTAGCA 7102 ||| |||||||||||||| ||||||||||| | |||||||| || || | Sbjct 34421 TCAAGGATTTTACCAACGTCTTTAGAAGAACCGTATAAGTTACCATCTTTGATTTTAACG 34362 Query 7103 CCATTAGCATCAATACCCTGGTCGTTAATGTTCTTATCATCGAGCAGAGGAACGTA 7158 ||| |||||| ||||| |||||||| | ||| ||||| |||| |||| ||| Sbjct 34361 CCAGAAGCATCGATACCTTGGTCGTTCACGTTACGGTCATCCAGCAATGGAATGTA 34306 Score = 98.7 bits (108), Expect = 5e-16 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 9372 TTCTTCCATAGGGTCTGGCTGTGGTTTCCAGGTACGTAATTCATGAGCAAGGTCTGGCAT 9431 ||||| ||| ||||| |||||||||| ||||||||| || ||||||||||| ||||| Sbjct 32136 TTCTTGCATTGGGTCAGGCTGTGGTTGGTAGGTACGTAGTTTGTGAGCAAGGTCAGGCAT 32077 Query 9432 ACGTTTA---AGTTCTGCAATCTTAGCTACAAGAGATAA-CGTAATAGTCTGATCAACTG 9487 |||| | ||||||||| | || | || | ||| | ||||||||| || || | Sbjct 32076 ---TTTACGCAATTCTGCAATATCTGCCAGAA-TGTTAAGGGCAATAGTCTGGTCTACGG 32021 Query 9488 TATTACCTAACGTTTGAACCATGAAGCTCAGGTCCTGAGATTTCTGGTTATCAATTTCAG 9547 ||||||| | || || | |||||| ||| || || | |||| |||||| ||| | Sbjct 32020 TATTACCCATAGTCTGTAACATGAATGCCAGTTCTTGTGCTTTCATGTTATCTTCTTCTG 31961 Query 9548 CAGTATTAATATCAA 9562 | || | ||||||| Sbjct 31960 CCGTGGTGATATCAA 31946 Score = 98.7 bits (108), Expect = 5e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 50501 CTGGAAGACAGAATCTCTGCACTAACTACTAAAGACCCCCAGAAGCTTAAGGTATATACC 50560 || ||||||||||| || || |||| ||||||||||| | || |||||||| ||||| Sbjct 61837 CTTGAAGACAGAATATCCGCTTTAACCACTAAAGACCCTAATAAACTTAAGGTGTATACA 61778 Query 50561 GATGGCTATGATGGTCACAGTCTTCGTGCGTATGCTTACTTTGGTGAGCAGATGCCAGAC 50620 ||||| |||||||| ||| || | ||||| | |||||| || | |||||||| Sbjct 61777 GATGGTTATGATGGACACTGTTTGCGTGCTTTCTATTACTTCAAAGACCGTATGCCAGAT 61718 Query 50621 ATAGTAGATACTGTAGA 50637 || || || |||||||| Sbjct 61717 ATTGTTGAAACTGTAGA 61701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 229083217286870