Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq253 334 1e-86 >seq253 Length=360942 Score = 334 bits (370), Expect = 1e-86 Identities = 762/1125 (68%), Gaps = 26/1125 (2%) Strand=Plus/Plus Query 27916 GATGCGCGACCGTTGTCAAATGCTTTCATGATATCGTCATCTGGGTTCAGACGAACACCA 27975 |||||||||||||| | ||| | | | | ||||||| || || || || || Sbjct 104652 GATGCGCGACCGTTTTTAAAGATCTCCGCCACACTATCATCTGCTTTGAGTCGTACTCCG 104711 Query 27976 CAAGCACCTTCAACGTAAAGAATCGGAGCGACGCTGGCTTTAACGCCACGCAGACGATCA 28035 || || ||||| | || || || || || |||| ||||| || || || || Sbjct 104712 CAGGCGCCTTCCATATATAGGATAGGTGCAACGCGTGCTTTGACATTTTCTAGGCGTGCA 104771 Query 28036 ACGCGAGCCATCAAAGCTTGCTTGGTGATTTCCATACGTTCTTCCAGAAGATCCCAGAAA 28095 | ||| | |||||| |||| |||| ||| | | |||||||| || | | ||| ||| Sbjct 104772 ATGCGTGTCATCAAGGCTTTTTTGGCGATCGCTAGGCGTTCTTCGAGTCGTTGCCA-AAA 104830 Query 28096 CGCATAGG-ATTGCCATTTGAATCAAGAGCGATTCGCGGCAAGTTCAGAGTGACCACACC 28154 ||| | |||||| | | |||| || || ||||||| ||| || | | ||||| Sbjct 104831 CGCGTCTTCATTGCCTTGCGCTTCAATGGCAATACGCGGCAGGTTAAGGCTAATGACACC 104890 Query 28155 CAAGTTGTTACGGCCTTCATGAACTTCAACACCGTTTTCGTCTTCCCAGCGATGCAAGAA 28214 || || |||||||| ||||||| || || ||||| || | || | ||||| Sbjct 104891 TAAATTATTACGGCCATCATGAATTTGTTGGCCATTTTCTTCGT---AGACACCTAAGAA 104947 Query 28215 ACTACGGCATCCCATTGGGAATTTGAAACTA-CCAGTCACTTCAACGATCTTATCATAGC 28273 || ||||| |||||||| ||| |||| | || || || || || | || |||||| Sbjct 104948 GCTGCGGCAGCCCATTGGCGTTTT-AAACGAGCCCGTTACATCGACAACTTTGTCATAGT 105006 Query 28274 TCAGAATGTCCGGATACATACGTTTCGCAGCGCATTCCAGAGCCAACTGTTTGATACGAT 28333 | | ||||| |||||||| ||||| || || || | || |||||||||||| || Sbjct 105007 TTAAGATGTCGGGATACATGCGTTTGCTCGCACACTCTAATGCTAACTGTTTGATATCAT 105066 Query 28334 ACAGCGGATCAGTCGGGTTCAAG-TTGTGTCCGTCTTTCAGAGCGAATACCAGTTTCGGG 28392 | |||||| | || | || | || | ||| | ||| || || | ||| ||| Sbjct 105067 AGTTAGGATCAC-CATATTGGTGATTAAGGCCTTTTTTAATAGCAAACACTAATTTAGGG 105125 Query 28393 AAAACAGGGGTGATACCCTCTTTACCAAGACCAGCCAAACGAACTTTCAGGATTGCTTCT 28452 ||||| | || ||| | |||||| | ||||| | ||| ||| || || | || | Sbjct 105126 AAAACGGCAGTTTTACGATTTTTACCTAACCCAGCGATACGGTTTTTTAGAATGGATTGT 105185 Query 28453 TGAATCAGTTCTGACTCCCAGCTA-GTACCAAGACCAAAGCCGAAGGTACAGAACGGAGT 28511 || |||| || || | || | || || | |||||| || ||||| ||| || || Sbjct 105186 TGGATCAAGCGTG-CTTCTTGCGATGTGCCTAAACCAAACCCAAAGGTTACGAAGGGGGT 105244 Query 28512 TTGACCATTTGCGGAGTGCAGAGTGTTGACCTCATACTCCAGACCTTGCATAGCATCATA 28571 ||||||||| |||| ||||| ||||| || || || || || ||| | ||||| || Sbjct 105245 TTGACCATTGGCGGTATGCAGTGTGTTCACTTCGTATTCAAGGGATTGGAAGGCATCGTA 105304 Query 28572 TACAG-CTTTGCGAGTCTTTGCAAT-AGCATATTGCTGTTG-ATCTGGAATTTTCCAGTA 28628 ||| |||| || || || || |||||| || | | |||| ||| ||| | Sbjct 105305 -ACATTCTTTTTCGGT-TTGGCTATCAGCATAGC-CTTTCGCATCTTCAATGCCCCAATT 105361 Query 28629 ACGAGCTTCATCCAAGTGCTTTTCGTGTGTCATTTTAACATACGGTGCCAGCACTTCGTC 28688 ||| | | || ||||| | | || | ||||| || || || | ||| || Sbjct 105362 GATCGCTGTTTTTAGATGTTTTTCATAGCTGATGTGGACATAAGGAGCAAGGATTTCATC 105421 Query 28689 AATGCGATTGATTGTGTTACCGCCATAAATGTGACTTGCTACTTGAGCGATGATTTGAGC 28748 |||||| ||||| ||| | || |||||||| || || |||||||||||||| ||||| || Sbjct 105422 AATGCGGTTGATGGTGGTGCCACCATAAATATGGCTAGCTACTTGAGCGATAATTTGGGC 105481 Query 28749 AATCACGGCAGCAGCGGTAGAAATGCTTTTCGGAGTCTCGATTTGAGCATTACCCATTCT 28808 |||| || | || || ||||| ||| |||| ||| |||| |||||||||||| | Sbjct 105482 TGTCACTGCGGTGGCAGTGGAAATTGATTTAGGAGGCTCTATTTCGGCATTACCCATTTT 105541 Query 28809 GAAACCACGTTTCAACATTCCTTCAACATCTATCAACATGCAGTTAAACATTGGGAAGAA 28868 || ||| | ||||| ||||||| ||| |||| ||| ||||||||||| ||||| || Sbjct 105542 AAACCCATTAGTTAACATGCCTTCAAGATCAATCAGCATACAGTTAAACATGGGGAAAAA 105601 Query 28869 CGGTGAATAATCAAGATCGTGGAAGTGAATCCAACCATTTTCGTGTGCTTGCATAACTTC 28928 || | |||||| |||||||| | ||||| ||| |||||| || ||||| | Sbjct 105602 TGGCGCATAATCGAGATCGTGATAATGAATTTCACCGCGTTCGTGAGC---AATAACCAC 105658 Query 28929 AACA---GGC---AGATAATGCTTGGCGAAATGCTTACTAACGATACCAGCTACCAAATC 28982 | || ||| | || || || ||| ||||||| || || || || | |||||| Sbjct 105659 ATCACGTGGCAAAATATGTTGTTTAGCGTAATGCTTTGCGACAATGCCTGCGAGCAAATC 105718 Query 28983 GCGTTGAGTTGGAATTACCTTGGCGTCTTTGTTTGCATTTTCATT 29027 ||||| || || || || ||| ||||||||||||||||||||| Sbjct 105719 ACGTTGGGTAGGGATCACTTTGCTGTCTTTGTTTGCATTTTCATT 105763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710275990889680