Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_024124.2 Length=169148 Score E Sequences producing significant alignments: (Bits) Value seq1596 104 3e-17 seq253 100 3e-16 >seq1596 Length=248270 Score = 104 bits (114), Expect = 3e-17 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 108494 TATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCTCTGACTCCA 108553 ||||| || ||||| ||||||||||| |||||||| || || ||||||||||||||| | Sbjct 48828 TATCCACAACTGACTATCCGTGTATCGGGTTATGCGGTGCGTTTTAACTCTCTGACTAAA 48887 Query 108554 GAACAGCAGCGCGACGTTATCGCTCGTACCTTTAC 108588 |||||||||| |||||||| ||||||| || || Sbjct 48888 GAACAGCAGCAAGACGTTATTACTCGTACTTTCAC 48922 >seq253 Length=360942 Score = 100 bits (110), Expect = 3e-16 Identities = 452/707 (64%), Gaps = 21/707 (3%) Strand=Plus/Minus Query 124491 AACGGGTTTAAGCTAGGTAATGCTCAAATTGAAACGCCTAAATCGATTGGTGTTGCTACT 124550 || |||||||| | |||||||| |||| || | |||||||| ||| ||| || Sbjct 105550 AATGGGTTTAAAATGGGTAATGCCGAAATAGAGCCTCCTAAATCAATTTCCACTGCCACC 105491 Query 124551 GCAATTATGGCACAAATTACCGCACAGGTTGCTTCACATCAGTACGGCGGAACGACTTTT 124610 ||| | | || ||||||| ||| || || ||| ||| || || || || || | Sbjct 105490 GCAGTGACAGCCCAAATTATCGCTCAAGTAGCTAGCCATATTTATGGTGGCACCACCAT- 105432 Query 124611 GCTAATGTA--GATAAAGTACTTTCTCCTTATGTTAAACGCACCTATGCAAAACATATTG 124668 | | | | ||| || | ||| |||||||||| | || ||||| ||||||| | Sbjct 105431 -CAACCGCATTGATGAAATCCTTGCTCCTTATGTCCACATCAGCTATGAAAAACATCTAA 105373 Query 124669 AGGATGCAGAAAAATGGCAAATCGCTGATGCGTTGAATTATGCCCAATCTAAAACAGAAA 124728 | || || ||| || | |||||| ||||| | |||| |||| Sbjct 105372 AAACAGCGATCAATTGGGGCATTGAAGATGCGAAAGGCTATGCTGATAGCCAAACCGAAA 105313 Query 124729 AAGACGTATACGATGCATTTCAAGCTTATGAGTATGAAGTAAATACTCTTTTTAGCTCAA 124788 |||| |||||||| || ||| | ||| || ||||| || || || || | | | Sbjct 105312 AAGAATGTTACGATGCCTTCCAATCCCTTGAATACGAAGTGAACACACTGCATACCGCCA 105253 Query 124789 ACGGTCAAACGCCTTTTGTAACAATTACATTTGGTACTGGAAC-TGACTGGACTGAACGA 124847 | |||||||| || || ||||| || |||||| || || | | || | ||| Sbjct 105252 ATGGTCAAACCCCCTTCGTAACCTTTGGGTTTGGTTTAGGCACATCGCAAGAA-GCACGC 105194 Query 124848 ATTATTCAGAAAGCAATTCTTAAAAACCGCATTAAAGGCCTTGGTCGTGATGGAATAACT 124907 | || || || | ||||| |||||||| || || | ||| || | | |||| Sbjct 105193 TTGATCCAACAATCCATTCTAAAAAACCGTATCGCTGGGTTAGGTAAAAATCGTAAAACT 105134 Query 124908 CCTATTTTCCCTAAACTTGT-TATGTTCATTGAAGAGGGTGTCAATCTTTATAAAGACGA 124966 | ||||||||||| | || | || | ||| || | || | |||| | | | || Sbjct 105133 GCCGTTTTCCCTAAATTAGTGTTTGCT-ATTAAAAAAGGCCTTAATCACCAATATGGTGA 105075 Query 124967 CCCGAACTATGATATTAAGCAGCTTGCTCTAGAGTGTGCAAGCAAAAGAATGTATCCTGA 125026 || ||||||||||| || ||| | || |||||||||| |||||| | |||||||| || Sbjct 105074 TCCTAACTATGATATCAAACAGTTAGCATTAGAGTGTGCGAGCAAACGCATGTATCCCGA 105015 Query 125027 TATTATTTCAGTTAAGAACAA--TAAAGCTATCACTGGTTCATCTATTCCTGTTTCTCCA 125084 || || | || || || | | | | || || || | || | ||| Sbjct 105014 CAT--CTTAAACTATGACAAAGTTGTCGATGTAACGGGCTCGTTTA------AAACGCCA 104963 Query 125085 ATGGGTTGTCGTAGTTTCTTGAGTGTATGGAAAGATTCGACTGGAAATGAAATTCTTGAT 125144 ||||| || || || ||||| |||| | |||| | ||| | |||||| |||| Sbjct 104962 ATGGGCTGCCGCAGCTTCTTAGGTGTCTACGAAGA---AAATGGCCAACAAATTCATGAT 104906 Query 125145 GGACGTAATAATCTTGGTGTTGTAACACTGAATCTTCCTCGTATTGC 125191 || ||||||||| | ||||| | | || || || || |||||||| Sbjct 104905 GGCCGTAATAATTTAGGTGTCATTAGCCTTAACCTGCCGCGTATTGC 104859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541134012719840