Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_024125.2 Length=168470 Score E Sequences producing significant alignments: (Bits) Value seq1596 102 9e-17 seq253 98.7 1e-15 seq613 82.4 8e-11 >seq1596 Length=248270 Score = 102 bits (112), Expect = 9e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 62911 ATTACAAACTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 62970 |||||| | | ||| || ||||||| |||||||| |||||||||| |||||||| Sbjct 48936 ATTACAGAGTACTGGTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAG 48877 Query 62971 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATA 63019 ||||||| || || |||||||| ||||||||||| ||||| || ||||| Sbjct 48876 AGTTAAAACGCACCGCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 >seq253 Length=360942 Score = 98.7 bits (108), Expect = 1e-15 Identities = 454/709 (64%), Gaps = 25/709 (4%) Strand=Plus/Plus Query 44312 GCGATACGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATCAAGAATTTCA 44371 || ||||| || || || || | | ||||| | ||||||||| |||||| |||||| Sbjct 104859 GCAATACGCGGCAGGTTAAGGCTAATGACACCTAAATTATTACGGCCATCATGAATTTGT 104918 Query 44372 TTACCAGTCGAATCTTTCCATACGCTCAAGAAACTACGGCAACCCATCGGAG----AAAC 44427 | ||| | |||| | || | ||||| || ||||| ||||| || | |||| Sbjct 104919 TGGCCATTT---TCTTCGTAGACACCTAAGAAGCTGCGGCAGCCCATTGGCGTTTTAAAC 104975 Query 44428 AGGAACAGATGAACCAGTGATAGCTTTATTGTTCTTAGCTGAAATAATATCAGGATACAT 44487 || | | | || || | |||| | | ||| | || || || |||||||| Sbjct 104976 --GAGCCCGTTA--CATCGACAACTTTGT----CATAGTTTAAG--ATGTCGGGATACAT 105025 Query 44488 CCTTTTGCTTGCGCACTCTAGAGCAAGCTGTTTAATATCATAGTTCGGGTCGTCTTTATA 44547 | |||||| || ||||||| || | |||||| ||||||||||| || || | | | Sbjct 105026 GCGTTTGCTCGCACACTCTAATGCTAACTGTTTGATATCATAGTTAGGATCACCATATTG 105085 Query 44548 AAGATTAACACCTTCTTCAACGAACATA-ACAAGCTTAGGGAAAATAGGAGTTATCCCAT 44606 |||||| |||| || || | || | || | |||||||||| | |||| | | || Sbjct 105086 GTGATTAAGGCCTTTTTTAA-TAGCAAACACTAATTTAGGGAAAACGGCAGTTTTACGAT 105144 Query 44607 CACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCGTTCAGTCC 44666 ||| | || ||||| ||||| ||||| | || || |||| ||| | || Sbjct 105145 TTTTACCTAACCCAGCGATACGGTTTTTTAGAATGGATTGTTGGATCAAGCGTGC-TTCT 105203 Query 44667 AGTCA-GTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTGTCCGTTTGAACTAAAG 44725 | | || || |||||| || ||||| || || ||||| || || | || Sbjct 105204 TGCGATGTGCCTAAACCAAACCCAAAGGTTACGAAGGGGGTTTGACCATTGGCGGTATGC 105263 Query 44726 AGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGTCTTTTTCTGTTTTA 44785 || || || ||||| |||||| | |||||| |||||||| |||||||| |||| Sbjct 105264 AGTGTGTTCACTTCGTATTCAAGGGATTGGAAGGCATCGTAACATTCTTTTTCGGTTTGG 105323 Query 44786 GACTGGGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGCATCCTCAATATGTTTT 44845 | ||||| |||||| | || ||| || || | | ||||||| Sbjct 105324 CTATCAGCATAGCCTTTCGCATCTTCAATGCCCCAATTGATCGCTGTTTTTAGATGTTTT 105383 Query 44846 GCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTCG--CAAAAGTCGTTC 44903 ||||| || | |||||||||| ||| | || ||| || || | || || | Sbjct 105384 TCATAGCTGATGTGGACATAAGGAGCAAGGATTTCATC--AATGCGGTTGATGGTGGTGC 105441 Query 44904 CGCCGTATTGGTGAGAAGCAACCTGTGCAGTAATTTGTGCCATAATTGCAGTAGCAACGC 44963 | || || || ||| || || || ||||||| || | | ||| || ||| | Sbjct 105442 CACCATAAATATGGCTAGCTACTTGAGCGATAATTTGGGCTGTCACTGCGGTGGCAGTGG 105501 Query 44964 CAATTGATTTAGGAGTTTCAATCTGTGCATTACCTAGCTTAAATCCGTT 45012 |||||||||||||| || || | |||||||| | ||||| || || Sbjct 105502 AAATTGATTTAGGAGGCTCTATTTCGGCATTACCCATTTTAAACCCATT 105550 >seq613 Length=31296 Score = 82.4 bits (90), Expect = 8e-11 Identities = 88/112 (79%), Gaps = 6/112 (5%) Strand=Plus/Minus Query 71157 CGCTCTACCAAACTGAGCTACACGAAGTAAATTAAATTTGAGCGGATAATGAGAATCGAA 71216 ||||||||||| |||||||| | | | | || || |||||| | | |||||||| Sbjct 4254 CGCTCTACCAA-CTGAGCTATATCA-GCACATC---TTGGAGCGGGCAGCGGGAATCGAA 4200 Query 71217 CTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCCATTATACGATATCCGC 71267 | | ||||||||| ||||||| |||||||||| ||||||||||||| |||| Sbjct 4199 CCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 4148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538964459176400