Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_024142.2 Length=72583 Score E Sequences producing significant alignments: (Bits) Value seq410 251 3e-62 >seq410 Length=72445 Score = 251 bits (278), Expect = 3e-62 Identities = 635/951 (67%), Gaps = 27/951 (3%) Strand=Plus/Plus Query 3845 TTTACGGATAACCTACTGGAGTTCCGTAATGTAGAAGGGCATCGTCTTGGTGTTAAGCT- 3903 ||||||||||| | | |||||| |||| || || ||| |||| ||| | | Sbjct 22005 TTTACGGATAAGCGTATTGAGTTCGTGAATGCTGATGGTCATAAGTTTGGA-TTAGGTTT 22063 Query 3904 GTTTGGTGCTAAGACAGGTCTTCGTGGTACGAAGATATATGGTAAGCGTCCAACACTCTG 3963 ||||||||||||||||||| | ||||||| || || |||||||||||||| || || Sbjct 22064 GTTTGGTGCTAAGACAGGTATCCGTGGTAATAAAATGTATGGTAAGCGTCCTACCCTGGC 22123 Query 3964 TGTACTAGATGACTTGATTAGTGATGGTGATGCTAACTCCAAGACTAGCATGGAAGCTAT 4023 |||||| |||||||| | ||||| | |||||||| || || || |||||||| || Sbjct 22124 TGTACTTGATGACTTAGTGAGTGACGAGGATGCTAAGTCTAAAACAGAAATGGAAGCGAT 22183 Query 4024 TAAAGACACCGTTTATAAAGGTGTGAACCATGCTCTTGACCCAACTCGTCGTAAAGTAAT 4083 ||| ||||| || ||||| ||||| ||||||| ||||||||||| || | | Sbjct 22184 TAAGGACACTGTGTATAACGGTGTTGACCATGCCCTTGACCCAACAAAGAAAAAGATTGT 22243 Query 4084 CTTCAATGGTACTCCTTTTAATAAGGAAGACATTATCATTGAAGCAGTTGAGTCTGGTGC 4143 ||| |||||||| |||||||||||| | || || | ||| || |||||||| || | Sbjct 22244 CTTTAATGGTACGCCTTTTAATAAGAATGATGTTCTATATGAGGCCGTTGAGTCAGGCGG 22303 Query 4144 ATGGGATGTCAACGTATGGCCTGTATGTGAGAAGTTCCCTTGTAGTAAAGAAGAATTTCA 4203 ||| | || ||||| | ||| | |||||| ||||||||| || | |||||| Sbjct 22304 TTGGTACGTTAACGTTTACCCTATCTGTGAGCGCTTCCCTTGTGAAGAACATGAATTTGT 22363 Query 4204 GGGTGCATGGGATGACCGTTTCTCTTACGACTACATTAAAGCCCAATATGACATGGCAGT 4263 ||||||||| ||| || ||||| || || | |||| ||| ||||| |||| || Sbjct 22364 TGGTGCATGGCCTGAGCGATTCTCGTATGAATTTGTTAAGAGCCAGTATGAGTTGGCTGT 22423 Query 4264 TAAGACT-GGTAAGTTGGCTGGCTTCTATCAGGAACTTATGCTCCGTATTAGCTCTGAAG 4322 | ||| || | || | || | || ||||||||| | |||||| |||||| | Sbjct 22424 GAGAACTGGGCGAATTAAAT-CATTTAACCAAGAACTTATGTTACGTATTGCCTCTGATG 22482 Query 4323 ATGAGAGACTGGTTCAGGA-TAGTGAAATTAGATGGTATAGCAGAC-AGCAACTATTAAG 4380 | |||||| || |||| || | || | || | |||| | | ||| | | | | Sbjct 22483 AAGAGAGAATGATTCAAGAGTCATGGA--TACA--GTATTACTCTCGTACAAATCTCATG 22538 Query 4381 GATGAAGTCCTG--CTACAACTATTATATTACAACTGACTTTGCTACATCGGAGAAACAG 4438 | | | | || | ||||| ||||| || ||||||||| || ||| || Sbjct 22539 ACACAGTTACAGAATTATCATTATTACATTACCACAGACTTTGCTGTCTCTTCTAAAGAG 22598 Query 4439 ACCAGTGACTATAGTGTCATATCAGTTTGGGCTTATAGTTCTAATGGAGATTGGTTCTGG 4498 | |||||| |||||||| |||||||| ||| | | | || |||||| || | Sbjct 22599 AGTGCTGACTACAGTGTCATTATTGTTTGGGCGTATGACTATCAAGGTAATTGGTACTTG 22658 Query 4499 GTTGATGGTGTGGCTAATCGTCAGCTTATGGATAAAAACTTTGATGACCTGTTCCGTCTG 4558 || |||||| | || || ||||| ||| || |||| | ||| | ||| Sbjct 22659 GTAGATGGTATTTGCAAGAAACAAGAGATGGACGCTAACCTTAATGATTTATTCAGACTG 22718 Query 4559 GTTCAAGAATACCAACCACAAAACGTTGGTGTCGAAATCACAGGGCAGCAAGGTGGATTC 4618 |||||| || | ||||| |||||||| ||| | ||||| |||||| |||| ||| Sbjct 22719 GTTCAAATTTATAACCCACAGTCTGTTGGTGTAGAAGTAACAGGTCAGCAAAGTGGTTTC 22778 Query 4619 AT---TTCGCT-CCTTCAGA--AAGAAATGATTAACCGTAATGTCTTCTTTAACTTTGCA 4672 || || | | | | ||| |||| |||| |||| | | |||| ||||||| Sbjct 22779 ATTAGTTGGATACGTAGAGAACAAGAGATGAGGAACC------TATACTTTTCCTTTGCA 22832 Query 4673 TCTTCTGAAGGTGGTA---AGCCGGGTATACGTCCTGTAACCTCTAAGCTGTCACGCTTT 4729 |||| || ||| | ||||| || | ||||| || ||| ||| |||| | Sbjct 22833 CGCTCTGGTAGTCGTAAAGAACCGGGCATTAGACCTGTGACAGATAAACTGACACGTATG 22892 Query 4730 AACCTGGTAGTTCCATGGTTCAAAGCTGGTAAGATGTACTTCCCGGAAGAG 4780 || ||| || |||| ||| |||| ||||| | ||| || ||||| Sbjct 22893 AAGATGGCTGTGCCATTGTTTGCTACTGGAAAGATATTCTTTCCTAAAGAG 22943 Score = 190 bits (210), Expect = 9e-44 Identities = 664/1014 (65%), Gaps = 37/1014 (4%) Strand=Plus/Plus Query 17147 TTCCTTTGCTCGACGATAAGAACATTAACGACCAGGGTATTGATGCTAATGGTGCTACCA 17206 |||| ||||| || || ||| | |||||||| ||||| |||||| ||| | || | Sbjct 34310 TTCCATTGCTGGATGACCGTAACGTGAACGACCAAGGTATCGATGCTTCTGGCGTTAAAA 34369 Query 17207 TCGTTAACGGTAACCTTTATGGCTCTTCCAAAGACGTTGGTAACATCACTTCTAAACTGC 17266 || | |||||| | || || ||||| |||||||||||||| ||| | |||| ||| Sbjct 34370 TCAAAGATGGTAACTTATACGGTTCTTCTAAAGACGTTGGTAAAATCCTTGATAAAATGC 34429 Query 17267 CTCTGCTGTCAGAGAATGGTGGTCGTGTTAACCGTGTAGGCTTTACT---CGTCTGGCTC 17323 | || || | |||||||||||||||||||| || |||| ||||||| Sbjct 34430 CGTACATGGGTGAAGAAGGTGGTCGTGTTAACCGTGTTGG---TACTGTCCGTCTGGAAA 34486 Query 17324 GTGAAGGCTCTATTCATAAATTCGGCTTCTTCTACGAATTTACTCAAGAGTCCTTGGACT 17383 |||| || ||| |||| | || ||||| || | ||| |||| || | |||| Sbjct 34487 TCAAAGGTTCCATTTCTAAAATGGGTATCTTCCGTGAGTGGACTAAAGACTCTATCGACT 34546 Query 17384 TTGATTCTGATGACCAA--CTGAAAGAACACCTGTCTCGTGAACTGATGAACGGTGCTGT 17441 ||||| |||| || | |||| |||| || ||||||||| | | ||||| || Sbjct 34547 TTGATACTGA--CCCGATGCTGATGAAACATATGCAGCGTGAACTGGTAACAGGTGCGGT 34604 Query 17442 ACAGTTGACTGAAGCTGTTCTCCAGAAAGACCTGCTGGCTGCTGCTGGTACTGTACTGTA 17501 ||| | ||||||| | ||| | | || || | | |||||||||| | ||| Sbjct 34605 ACAAATCACTGAAGACATGCTCGAAATTGAGTTGTTACAAGGTGCTGGTACTATCATGTT 34664 Query 17502 TGCAGGTGCTGCCGTCTCTGATGCTACCATTACTGGTGAAGGTTC--TACCCCGTCTGTA 17559 ||| |||| || | |||| | || |||||||||||| | || | |||| | Sbjct 34665 TGCTGGTGTGGCATTGAAAGATGATGAAATCACTGGTGAAGGTGCGGTAATC--TCTGAA 34722 Query 17560 GTTTCTTATAAGAACCTGATGCGTCTTGACCAGATTCTTACTGAGAACCGTACCCCGACC 17619 ||| ||||| |||| ||| ||| | || | ||||||| || |||||||| || Sbjct 34723 GTTACTTATGAGAATCTGCAACGTTTAGATGATATTCTTAACGAAAACCGTACACCACGT 34782 Query 17620 CAGACTACTATCATCACTGGTTCTAAACTGACAGATAC-CAAAGTACTCGGTGGTACTCG 17678 | ||| | |||| |||||| | | || ||||| ||| || || || | |||| Sbjct 34783 AACACTGACGTTATCAAAGGTTCTCCATTCACTGATACGAAAACTATTCCGT-CTGCTCG 34841 Query 17679 TGTAATGTACGTTGGTTCTGAACTGGT-TCCAGAACTGAAAGCGATGAAAGACCTGTTTG 17737 | ||||| | ||| |||||| | | | | | | | |||||||| |||| Sbjct 34842 TTATATGTATATCGGTAACGAACTGCTGACTACTATTCGTAAC-ATGAAAGATAACTTTG 34900 Query 17738 GTAATAAAGCATTCATCGAAGTTCAGCACTATGCTGATGCTGGTACTCTGATGAATGGTG 17797 ||||| ||| || || || || |||||||||| || ||| | | |||||| Sbjct 34901 GTAATCCAGCGTTTATTCCTGTACAACACTATGCTGCGGCAGGTCATATCGCACATGGTG 34960 Query 17798 AAATTGGTTGTATTGATAAGTTCCGTATCAT--CCAGGTTCCA-GAGATGCTGCATTGGG 17854 || |||||| | ||| |||||| | || | ||| | | || || | | Sbjct 34961 AAGTTGGTTCTGTTGGCCCATTCCGTGTAATTGTGAACTTCAATGCGA---AACACTTTG 35017 Query 17855 CAGGTGCTGGTGCTCAGGTTACTACTAACCCGGGTTACCGTACCTCTATGGTATCTGGTC 17914 | ||| |||||| ||| |||| || | ||| || ||||| ||| | | Sbjct 35018 CTGGTAAAGGTGCTGCGGTAACTAACAA----AGATAC--TA--TCTATCGTAAC-ACTG 35068 Query 17915 AGGAACACTACGACGTATTCCCGATGCTGGTAGTTGGTGATGACTCCTTCTCTACCATTG 17974 | || | || || | ||||| ||| |||| ||||||| || || || |||| ||| Sbjct 35069 ACGATAAATATGATATCTTCCCAATGATGGTTGTTGGTGGTGGTTCATTTACTACTGTTG 35128 Query 17975 GCTTCCAGACTGATGGTAAGTCTGT-TAAGTTCACCATC-ATGACTAAGATGCCGGGTAA 18032 |||| | ||| || ||| || ||||||| | || || ||||| |||| || | Sbjct 35129 GCTTTGAAGCTGCAGG-CCGTCAGTATAAGTTC-CAGTCAATTACTAAAGTGCCTGGGGA 35186 Query 18033 AGAAACTGCTGACCGTAATGACCCGTATGGCGAAACTGGCTTCAGTTCTATCAAGTGGTA 18092 | |||||||||||||| ||||||| ||||| ||||||| |||| ||||| ||||| Sbjct 35187 ACAAACTGCTGACCGTCATGACCCATATGGTCAAACTGGATTCACCTCTATGTTGTGGTG 35246 Query 18093 CTATGGTATCCTGGTTAAACGTCCAGAACGTCTGGCTCTGATTAAGACTGTTGC 18146 || ||||| | || || | || ||| |||| ||||||| || ||||| Sbjct 35247 GTACGGTATGTTAATTCTTCGCTCTGAGCGTTTGGCGATGATTAAAACAGTTGC 35300 Score = 125 bits (138), Expect = 3e-24 Identities = 221/319 (69%), Gaps = 6/319 (2%) Strand=Plus/Plus Query 46836 TCTACCGTGTCTTCTATGTCCGGCATCTGCTCACCAAAGTAAGCATATGCACGAAGACTG 46895 ||||| || || | || || ||||| | || |||||| | ||||| | || | Sbjct 61701 TCTACAGTTTCAACAATATCTGGCATACGGTCTTTGAAGTAATAGAAAGCACGCAAACAG 61760 Query 46896 TGACCATCATAACCATCGGTATATACCTTGAGCTTCTGCGGATCTTTAGTAGTTAAAGCT 46955 || |||||||||||||| ||||| ||||| || || | || |||||||| |||||||| Sbjct 61761 TGTCCATCATAACCATCTGTATACACCTTAAGTTTATTAGGGTCTTTAGTGGTTAAAGCG 61820 Query 46956 GAGATACGGTCTTCAAGGCTTGCAAAGTCCAGTCCACAAAAGATCCAACCCGGTGGTGCT 47015 || || | ||||||||| || ||||||| |||||| ||| | ||| || |||||| Sbjct 61821 GATATTCTGTCTTCAAGACTATCAAAGTCTAGTCCAGTAAACAGCCAGCCTTTCGGTGCT 61880 Query 47016 TCGAAGCA----TTTCTTAATCTTCTTGGCGTATTTGGAACCAGATGGAATGGTTTGCAG 47071 ||||| || ||| | | || || | | | | ||||| ||| |||| | Sbjct 61881 CTAAAGCAACGTTTGATTACTTTACTGTACGGACTACG-GCTTGATGGGATGTTTTGTAA 61939 Query 47072 GTTTGGCTCAGAGGCAGATAATCTACCAGAAACCGTTCC-CCCAAATTGAGGTTGCCGAA 47130 ||| || | ||| | | ||||||||||| ||||| || || |||| | ||||| Sbjct 61940 GTTCGGGTTAGATGAACTCAATCTACCAGACTTGGTTCCACCTAAGTTGAAATATCCGAA 61999 Query 47131 TAGGTAGTGCCATCCATCC 47149 | ||| |||||||||||| Sbjct 62000 CAAGTAATGCCATCCATCC 62018 Score = 93.3 bits (102), Expect = 2e-14 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 14738 TTGATATTAATACTGCTGAAATTGATAACCAGAAATCTCAGGACTTGAGCTTCATGGTTC 14797 ||||||| | || || ||| |||||| |||| | || || || |||||| | | Sbjct 31946 TTGATATCACCACGGCAGAAGAAGATAACATGAAAGCACAAGAACTGGCATTCATGTTAC 32005 Query 14798 AAACGTTAGGTAATACAGTTGACCAGACTATTACA-TTATCTCTCGTAGCTAAAATTGCA 14856 | || | |||||||| || |||||||||||| | ||| | || | || | |||||| Sbjct 32006 AGACTATGGGTAATACCGTAGACCAGACTATTGCCCTTAACATTC-TGGCAGATATTGCA 32064 Query 14857 GAACTTAAGCGTA---TGCCAGACCTTGCTCATGAATTACGTACCTGGCGACCACAACCA 14913 ||| | ||||| |||| ||||||||||| || ||||||||| | |||||| || Sbjct 32065 GAATT---GCGTAAAATGCCTGACCTTGCTCACAAACTACGTACCTACCAACCACAGCCT 32121 Query 14914 GACCCTATGGAAGAA 14928 ||||| ||| ||||| Sbjct 32122 GACCCAATGCAAGAA 32136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232135953552992