Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq87 100 3e-16 >seq87 Length=489008 Score = 100 bits (110), Expect = 3e-16 Identities = 208/306 (68%), Gaps = 4/306 (1%) Strand=Plus/Plus Query 111906 GATCCTTTGCGATCGCATTAATGGTCAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCA 111965 |||| || || |||||||||||||||| || || || | ||| ||||| ||||| | Sbjct 362256 GATCTTTCGCAATCGCATTAATGGTCAGATCACGACGTAATAGATCATCTTCTATGGTAA 362315 Query 111966 CATCTGG-GCTGAACATCACCTCGAAATCGTG-GTATCCTGCGCCAGTTGAACGCTCGGT 112023 | || || || | | || || ||| | || || || | ||||||| ||| ||||| Sbjct 362316 CGTCAGGCGCAGCGTAGCAGCT--AAACCCTGTATAACCCGAGCCAGTTTTACGTTCGGT 362373 Query 112024 ACGGGCCAGGGCGTACTCTTCCTTGGTCTCAGGATGCAGGTAAACTGGGAATGCGGCACC 112083 | ||| | || || ||||| | ||| | || || || | || ||||| | || Sbjct 362374 TCTGGCTAATGCATATTCTTCATGGGTTTTTGGGTGTAGAAATACAGGGAAATCTTTCCC 362433 Query 112084 GACTTGCTCGAAGCCGAGTGCCATCATCTCTTCGTGGGTGGAGCCGACCACAACGTAGTC 112143 ||||||| | |||| |||||| |||| |||| | || |||||||| || || || || Sbjct 362434 TACTTGCTGGTAGCCTTGTGCCAGCATCGCTTCAGGCGTAGAGCCGACAACGACATAATC 362493 Query 112144 ACGGTCTTTGCTCTCAACACCCATCAGTTCATCGCGGACCGCGCCGCCGACCAGATAGAT 112203 || || | || | |||||| || || ||||| || || |||||||| || Sbjct 362494 GCGATCAGAAACAGGCAGGCCAAGCAGTTCGTCACGTACCGCTCCACCTACCAGATATAT 362553 Query 112204 TTTCAT 112209 |||||| Sbjct 362554 TTTCAT 362559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477180182160560