Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1266 111 3e-19 seq964 86.0 1e-11 >seq1266 Length=2164085 Score = 111 bits (122), Expect = 3e-19 Identities = 308/465 (66%), Gaps = 12/465 (3%) Strand=Plus/Plus Query 182743 TTATCTCCGTGGTTACATTTTGGACATGTATCTCCACAACGTGTTGCTTTAGAAGTATTA 182802 |||||||| ||||| |||||||| || |||| |||||| | ||||| || || Sbjct 368759 TTATCTCCTTGGTTTCATTTTGGTCAGATATCAGTGCAACGTTGCGTCTTAGAGGT--TA 368816 Query 182803 AAATGTATACGAGAAAACaaaaaaaaC--GTTGAAACGTTTATAGATGAAATAATTGTAA 182860 | ||||| | |||| ||| | || ||| | ||| || ||| ||||| | Sbjct 368817 AGGAGTATAAAACAAAATTTAAAGATTCTGTGGAAGCATTTTGTGAAGAAGCCATTGTTA 368876 Query 182861 GAAGAGAACTATCGGATAATTTTTGTTACTATAATAAACATTACGATAGTGTTCA--GTC 182918 || |||| || |||||||||||||||| || || ||| | || || | | |||| || Sbjct 368877 GACGAGAGCTGGCGGATAATTTTTGTTATTACAACAAAAACTATGACAATCTTCAAGGTT 368936 Query 182919 TACTCACGCATGGGCTAG--AAGAACATTAGAAGATCACGTTAATGATCCTAGAAAGTAT 182976 || || || ||||| || ||| ||| || | ||||| || ||| | || | Sbjct 368937 TA--CATGCCTGGGC-AGCCAAG-ACACTAAACGATCATCGCAAAGATAAGCGTAATCCT 368992 Query 182977 ATCTATTCTATTAAACAACTCGAAAAGGCAGAAACACATGACCCTCTATGGAATGCATCA 183036 |||| | | || || | |||||| | || ||||| | |||||||| | | Sbjct 368993 TGCTATACCCTAGAAGAATTTGAAAAGTCTCGTACCCATGATGATTTATGGAATTCTGCG 369052 Query 183037 CAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAA 183096 ||| | ||| || | | || || ||||||||| | |||||||| ||||| |||||||| Sbjct 369053 CAACTGCAGCTGGTTAATGAGGGTAAAATGCATGGCTTTTTACGCATGTATTGGGCTAAG 369112 Query 183097 AAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTATAGTATCTATATGAAC 183156 || || | ||||||||| | |||| || | |||||| ||| || | | || Sbjct 369113 AAAATCTTAGAATGGACAGAATCTCCCGAGCAGGCTTTGGAATATGCCATTTTACTTAAT 369172 Query 183157 AATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGGT 183201 |||||||| |||| ||| ||||| || || || || ||| Sbjct 369173 AATAAGTATAGTTTAGATGGTCGAGATCCCAATGGTTATGTGGGT 369217 >seq964 Length=291957 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 |||||| |||| || || ||||||||||| || | ||| | | |||||| || Sbjct 215383 AGAGTAGATTCTTTTTGAATATTATAATCGGACAAAGTGCGTCCGTCTTCCAATTGTTTA 215324 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| ||||| | ||||||| |||| | || | |||||||||||||| || || Sbjct 215323 CCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCCTTATCTTGAATTTTAGCC 215264 Query 81753 TTTATATTTTCAATCGTAT 81771 || | |||||||||||||| Sbjct 215263 TTAACATTTTCAATCGTAT 215245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903391855707680