Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1348 158 3e-33 seq869 127 5e-24 seq1349 104 6e-17 seq257 104 6e-17 seq1534 86.0 1e-11 >seq1348 Length=1847788 Score = 158 bits (174), Expect = 3e-33 Identities = 293/427 (69%), Gaps = 11/427 (3%) Strand=Plus/Minus Query 110676 TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAA 110735 |||| ||| || || |||||| | || || || ||| | || ||||| |||| Sbjct 1699615 TCAAATGGTCTGGTACCAATGCTCAGGGTGTTTAACAATGTAGCCCGCTATGTTGATCAG 1699556 Query 110736 GGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATA 110792 |||||| || | ||| | |||||||| ||| | || ||||||||||||||||| Sbjct 1699555 GGTGGTGGCAAACGCCCTGGTGCCTTTGCTATTTATTTGGAGCCTTGGCATTCAGATATT 1699496 Query 110793 TTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTA 110852 |||||||| || || | |||||| || ||||| || ||||| | ||| | Sbjct 1699495 TTTGAATTTTTGGATTTAAAGAAAAATACCGGCAAGGAAGAGCATAGAGCCAGAGATCTT 1699436 Query 110853 TTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGG 110912 || ||||| ||||||| | || || || ||||||||||| |||||||||| ||| Sbjct 1699435 TTCTATGCTCTGTGGATACCCGACTTGTTTATGAAACGTGTGGAAGAAAATGGTGACTGG 1699376 Query 110913 TCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAA 110972 || || |||||||| || | ||| ||||| ||||| | || | ||||| ||| Sbjct 1699375 TCCCTAATGTGTCCACACAAATGTCCCGGTCTGCAGGATGTTTGGGGTGAGGAGTTCGAA 1699316 Query 110973 GACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAA---CAAATTC-CAGCTCA 111028 || | || || |||||||||||||| || || || || || |||||| Sbjct 1699315 GAATTGTATACCAAGTATGAAAAAGAAGGAAA----AGCCAATCGCACCGTCAAAGCTCA 1699260 Query 111029 AGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTA 111088 | |||||||| || ||||| | ||||||||||| || || || ||||| ||||| Sbjct 1699259 GGCTCTTTGGTTTGCTATAATTGAAGCTCAAGTTGAAACCGGTACACCCTATATGTTGTA 1699200 Query 111089 TAAAGAT 111095 |||||| Sbjct 1699199 CAAAGAT 1699193 >seq869 Length=1271022 Score = 127 bits (140), Expect = 5e-24 Identities = 452/700 (65%), Gaps = 16/700 (2%) Strand=Plus/Plus Query 131489 TTCTGGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACC 131548 || ||||| || ||||| | ||| | | ||||||| || ||||||| | | ||| Sbjct 483453 TTTTGGACGGTAGAAGAAGTAGATCTTTCTAAAGATAACTCCGACTGGGAAAGACTCACC 483512 Query 131549 TTGAATGAAAAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATT 131608 ||||| |||| |||| | |||||||| |||||||||| ||||||||| Sbjct 483513 GACAATGAGCGTCATTTCATTTCACATGTTCTTGCTTTCTTCGCCGCTTCCGATGGCATT 483572 Query 131609 GTTATTGAAAATCTTGTTATTAATTTCATTCAAGAAATTGATATTCCTGAAGTAACATCG 131668 || | |||||||||||| |||| ||||||| | | || | || | | | Sbjct 483573 GTCAATGAAAATCTTGTCGAACGTTTCTCTCAAGAAGTACAAGTTACAGAGGCACGCTGT 483632 Query 131669 TTCTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTG--A 131726 ||||| |||||| || | ||| | | || || |||||| | |||| | Sbjct 483633 TTCTATGGCTTTCAAATTGCCATGGAAAATGTACACTCTGAAATGTAT--AGTATTCTAA 483690 Query 131727 TTGAGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATTATTTGATGCTGTAAATAAAT 131786 |||| ||| | |||| || || | || | | ||| ||||| | | | Sbjct 483691 TTGATAGTTATATTAAGGATCGTGAACAGCGTGATTATCTCTTTAATGCTATTGAAACTA 483750 Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846 | || || |||| || || || ||||| || |||||| | || || | Sbjct 483751 TGCCAGCTGTTAAGCGTAAGGCCGATTGGGCAATGGCTTGGATTTCTTCGAAATCAGCAA 483810 Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906 ||||| | | | || | ||||||||| ||| || ||||| |||||| || || Sbjct 483811 ATTTTGGTGAACGTATTATTGCTTTTGCTGCTGTAGAGGGTATTTTCTTTAGTGGCAGTT 483870 Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966 | | | ||||||||||| ||||| ||||| | |||||||| || |||| |||||| Sbjct 483871 TTGCTTCCATCTTTTGGCTAAAGAAACGTGGTCTTATGCCTGGTCTTACATTCTCCAATG 483930 Query 131967 AATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAAT 132026 | || || || | ||||| | || ||| ||| |||||| ||||||| | || || || Sbjct 483931 AGTTGATATCACGTGATGAGGGTTTACATTGTGATTTTGCTGTATTAATGTTTA-AACAT 483989 Query 132027 TTGCTGATAA------ACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTG 132080 ||| | | || | | || || | | |||| || |||| | ||||| || Sbjct 483990 TTGGT-ACAACGTCCCAGTCGA-GAGAGAATTATT---GAAATTATCACTGAAGCGGTGA 484044 Query 132081 ATATCGAGAAGGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTG 132140 | || || |||| || ||||||| |||||||| ||||||||| || |||||| | Sbjct 484045 AAATTGAACAGGAATTCCTTACAGATGCTTTGCCCGTCAATTTGATAGGCATGAATTGTA 484104 Query 132141 ACTCTATGAAGGAGTACATTGAATTCGTTGCTGATCGTTT 132180 | | ||| ||| || || ||||| || || |||||||| Sbjct 484105 AATTAATGTCGGAATATATAGAATTTGTGGCCGATCGTTT 484144 >seq1349 Length=137958 Score = 104 bits (114), Expect = 6e-17 Identities = 209/305 (69%), Gaps = 9/305 (3%) Strand=Plus/Minus Query 304778 GATGATTTGACATTAAAATACTCTGATATCATTAAATATAACAATTTAATTAAGAAAAAG 304837 |||||||| || ||| || ||||||||||| ||||||| ||||| | |||| Sbjct 6704 GATGATTTAACGCACAAACTTTCCGATATCATTAAGGCTAACAATG-AATTACGTAAAAA 6646 Query 304838 TTAACG-AGCGATTCTAATTCACATTTGGTTATTGATTATTCAAACAATTTACAATATCA 304896 | || | | || | || | ||| | |||| || || ||| | ||||||| ||| Sbjct 6645 TGAAGGCACCGGTGCTGCAGCCCATGTTATTATGGAAAATATAAAAATGTTACAATTTCA 6586 Query 304897 TATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT---CAAAGATC 304953 | | || ||| | | || ||||| || | || ||||| | || |||| || Sbjct 6585 TGTAGCCACACTCGTAGACAATGACATGCCCGG---TATGCCAAGAGCTATGCAAAAGTC 6529 Query 304954 TGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCGAGG 305013 |||| |||| |||| | |||| ||| | || |||||||| ||||||||||| || Sbjct 6528 CGGCAAACCTCTAAAAGCCATTAAATCACGTCTAAAGGGTAAAGAAGGTCGTATTCGTGG 6469 Query 305014 TAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGATTCTCA 305073 |||| | |||||||||||||| ||||| ||| | | ||| || |||||||| || || Sbjct 6468 TAATTTGATGGGAAAACGTGTAGATTTCTCAGCACGTACTGTCATTACACCTGA-TCCCA 6410 Query 305074 AATTA 305078 | ||| Sbjct 6409 ATTTA 6405 >seq257 Length=475623 Score = 104 bits (114), Expect = 6e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| | |||||| | || || || ||||||||||||| || ||| |||| ||| |||| Sbjct 74671 GTTTTATTCAATCGCCAGCCCTCTTTGCATAAAATGTCCATTATGTGTCATCAAGCCAAA 74612 Query 305390 GTATTATCTGGATTGA-CATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGA 305448 || | | | | || | ||||| || |||| |||||||||| || |||||||| || Sbjct 74611 GT-TCAGCCACAAAGAACTTTTCGCTTTAATGAGTGTGCTTGTACTCCATATAATGCTGA 74553 Query 305449 TTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 ||||||||| |||||||||||| | ||| | || || Sbjct 74552 TTTTGATGGTGATGAAATGAATTTACATTTGCCCCA 74517 >seq1534 Length=610949 Score = 86.0 bits (94), Expect = 1e-11 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 167249 ACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTAC 167307 ||| |||||||| ||||| | | || |||||||||||||| || | ||||| | || | Sbjct 294571 ACCCGCATTATCAAATTC-TCCACAATAATTTGGTGCTGAGAAAAGTGTAACAAGTTGCC 294513 Query 167308 GATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 | ||| ||| ||||||||||| ||||| ||||||| ||| ||||| Sbjct 294512 GTTTGGCAAAAAATTCATAACCGTCTTCGACAACTTGATGAGCACG 294467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186786752055193