Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_024786.1 Length=71248 Score E Sequences producing significant alignments: (Bits) Value seq410 226 1e-54 >seq410 Length=72445 Score = 226 bits (250), Expect = 1e-54 Identities = 588/882 (67%), Gaps = 16/882 (2%) Strand=Plus/Minus Query 66791 ATGAATCCACCCTGCTGCCCTGTGACTTCAATACCAACATTTTGTGGTTGGTATTCTTGA 66850 ||||| |||| ||||| ||||| ||||| | ||||||| ||||| | || |||| Sbjct 22780 ATGAAACCACTTTGCTGACCTGTTACTTCTACACCAACAGACTGTGGGTTATAAATTTGA 22721 Query 66851 ACCAGACGGAACAAGTCATCAAAGTTTTTATCCATAAGCTGACGATTAGCCACACCGTCA 66910 ||||| | ||| || |||| || ||| ||||| || || | ||| || Sbjct 22720 ACCAGTCTGAATAAATCATTAAGGTTAGCGTCCATCTCTTGTTTCTTGCAAATACCATCT 22661 Query 66911 ACCCAGAACCAATCTCCATTAGAACTATAAGCCCAAACTGATATGACACTGTAGTCACTG 66970 ||| || |||||| || | | | ||| |||||||| ||||||||||||||| Sbjct 22660 ACCAAGTACCAATTACCTTGATAGTCATACGCCCAAACAATAATGACACTGTAGTCAGCA 22601 Query 66971 GTCTGTTTCTCCGAGGTAGCAAAGTCGGTCGTAATGTAATAGTTGTAGCAAGACTTCATC 67030 ||| ||| ||| ||||||||| || ||||||||||| | || | || | | Sbjct 22600 CTCTCTTTAGAAGAGACAGCAAAGTCTGTGGTAATGTAATAATGATA---ATTCTGTAAC 22544 Query 67031 C---TCAATAGCTGTTGTCTGCT-GTACCATTTAATCTCACTA-TCCTGAACAAGACGTT 67085 ||| || | |||| | ||| | | ||| || | || |||| | | | Sbjct 22543 TGTGTCATGAGAT-TTGTACGAGAGTAATACTGTATC-CATGACTCTTGAATCATTCTCT 22486 Query 67086 CATCTTCAGAACTAATACGAAGCATAAGTTCCTGATAGAAGCCAGCCAACTTACCG-GTC 67144 | || ||||| |||||| | ||||||||| || | || | || | || || Sbjct 22485 CTTCATCAGAGGCAATACGTAACATAAGTTCTTGGTTAAATG-ATTTAATTCGCCCAGTT 22427 Query 67145 TTAACTGCCATGTCATATTGGGCTTTTATGTAGTCATATGAAAAACGGTCATCCCATGCA 67204 | || |||| ||||| ||| || | | ||||| || || || ||| ||||||| Sbjct 22426 CTCACAGCCAACTCATACTGGCTCTTAACAAATTCATACGAGAATCGCTCAGGCCATGCA 22367 Query 67205 CCCTGAAACTCTTCC-CTACTACAGGGAAACTTCTCACACACAGGCCATACGTTGACATC 67263 || ||| || | || | |||||| | |||||| | ||| | ||||| || | Sbjct 22366 CCAACAAATTCATGTTCTTCACAAGGGAAGCG-CTCACAGATAGGGTAAACGTTAACGTA 22308 Query 67264 CCATGCACCAGACTCAACTGCTTCAATAATGATGTCTTCCTTATTAAATGGAGTACCATT 67323 ||| | || |||||||| || ||| | | || | ||||||||| || |||||||| Sbjct 22307 CCAACCGCCTGACTCAACGGCCTCATATAGAACATCATTCTTATTAAAAGGCGTACCATT 22248 Query 67324 GAAGATTACTTTACGACGTGTTGGGTCAAGAGCATGGTTCACACCTTTATAGACAGTATC 67383 |||| | || |||||||||||| ||||||| ||||| ||||| ||||| || Sbjct 22247 AAAGACAATCTTTTTCTTTGTTGGGTCAAGGGCATGGTCAACACCGTTATACACAGTGTC 22188 Query 67384 CTTAATAGCTTCCATACTCGTCTTAGAGTTAGCATCACCATCACTAATCAAGTCATCCAG 67443 |||||| |||||||| || ||||| |||||||| | ||||| | |||||||| || Sbjct 22187 CTTAATCGCTTCCATTTCTGTTTTAGACTTAGCATCCTCGTCACTCACTAAGTCATCAAG 22128 Query 67444 TACACAGAGCGTCGGACGTTTACCATATATCTTCGTACCACGAAGACCTGTCTTAGCACC 67503 |||| || || ||||| |||||||| || || ||||||| | ||||||||||||||| Sbjct 22127 TACAGCCAGGGTAGGACGCTTACCATACATTTTATTACCACGGATACCTGTCTTAGCACC 22068 Query 67504 AAAC-AACTTAACACCCAGTCGATGTCCTTCTGCATTACGGAACTCTAACAGGTTATCTG 67562 |||| ||| ||| || | ||| || || ||||| |||||| | | ||||| | Sbjct 22067 AAACAAACCTAA-TCCAAACTTATGACCATCAGCATTCACGAACTCAATACGCTTATCCG 22009 Query 67563 TAAAGGTAGCTTCAGGTATCCACTGTTGAAGGAACTCACTATTCTTGTATCGGAACTCAA 67622 |||| | || | || | | | |||||| || || | ||||| | || | Sbjct 22008 TAAACTTCGCCACGGGCACGAATTTCTGAAGGGTCTGGCTTTGTAAGTATCTGTTTTCTA 21949 Query 67623 TGTTCTTACGTGCAGACTTAGCACCGTTATCCATTGAGTCAG 67664 |||||| | | ||| || ||||| ||||||||||||| Sbjct 21948 AGTTCTTTCTTAGGTTCTTGGCTCCGTTGTCCATTGAGTCAG 21907 Score = 172 bits (190), Expect = 3e-38 Identities = 659/1016 (65%), Gaps = 33/1016 (3%) Strand=Plus/Minus Query 53775 GCAACAGTCTTAATTACAGCCAGACGCTCTGGACGTTTAACCAGGATACCGTAGTACCAC 53834 ||||| || ||||| | |||| |||||| | || || | |||||||| ||||| Sbjct 35300 GCAACTGTTTTAATCATCGCCAAACGCTCAGAGCGAAGAATTAACATACCGTACCACCAC 35241 Query 53835 TTGATTGAACTGAAGCCAGTCTCACCATACGGGTCATTACGGTCAGCAGTTTCTTTACCC 53894 || || |||| ||||| | |||||| ||||||| |||||||||||||| || || Sbjct 35240 AACATAGAGGTGAATCCAGTTTGACCATATGGGTCATGACGGTCAGCAGTTTGTTCCCCA 35181 Query 53895 GGCATCTTAGTCAT-GATGGTGAACTTA-ACAGACTTACCATCAGTCTGGAAGCCAATGG 53952 |||| ||||| || || | ||||||| || ||| || ||| | ||||||| | Sbjct 35180 GGCACTTTAGTAATTGACTG-GAACTTATACTGACGG-CCTGCAGCTTCAAAGCCAACAG 35123 Query 53953 TAGAGAAGGAGTCATCACCAACTACCAGCATCGGGAACACGTCATAGTGTTCTTGGCCAC 54012 ||| || || || ||||||| |||| ||| ||||| | ||||| | || | || Sbjct 35122 TAGTAAATGAACCACCACCAACAACCATCATTGGGAAGATATCATATTTATCGT---CAG 35066 Query 54013 TA--ACCATAGAAGAACGATAACCCGGGTTAGTAGTAGCTTGAGCACCAGCACCTGCCCA 54070 | || ||||| | | | |||||| || |||||| ||| || | Sbjct 35065 TGTTACGATAGAT-----AGTATCTTTGTTAGTTACCGC---AGCACCTTTACCAGCAAA 35014 Query 54071 ATGCA--GCATCTCAGGAACCTGGATAATACGGAACTTATCGATACAACCAACTTCACCA 54128 || |||| || | || | |||||| | | | |||||||||||||| Sbjct 35013 GTGTTTCGCATTGAAGTTCACA--ATTACACGGAATGGGCCAACAGAACCAACTTCACCA 34956 Query 54129 TTCATCAGAGTACCAGCATCAGCATAGTGCTGAATTTCGATGAATGCTTTATTACCGAAC 54188 | | | ||| || |||||||||| || | || || ||| |||||| || Sbjct 34955 TGTGCGATATGACCTGCCGCAGCATAGTGTTGTACAGGAATAAACGCTGGATTACCAAAG 34896 Query 54189 AGGTCTTTCATCGCTTTCAGTTCTGGA-ACCAGTTCAGAACCAACATACATTACACGAGT 54247 |||||||| | | | | | | | |||||| ||| | |||||| ||||| Sbjct 34895 TTATCTTTCAT-GTTACGAATAGTAGTCAGCAGTTCGTTACCGATATACATATAACGAGC 34837 Query 54248 ACCACCAAGTACTTTG-GTGTCAGTCAGTTTAGAACCAGTGATGATAGTAGTCTGAGTCG 54306 | || | || ||| || ||||| | | |||||| |||| | ||| | | | Sbjct 34836 AG-ACGGAATAGTTTTCGTATCAGTGAATGGAGAACCTTTGATAACGTCAGTGTTACGTG 34778 Query 54307 GGGTACGGTTCTCAGTAAGAATCTGGTCAAGACGCATCAGGTTCTTATAAGAAACTACAG 54366 | |||||||| || ||||||| | || | ||| ||| |||| ||||| |||| ||| Sbjct 34777 GTGTACGGTTTTCGTTAAGAATATCATCTAAACGTTGCAGATTCTCATAAGTAACTTCAG 34718 Query 54367 ACGGGGTA--GCACCTTCACCAGTAATGGTGGCATCAGAGGTAGCAGCACCTGCATACAG 54424 | | || |||||||||||||| || |||| || |||| ||| ||| Sbjct 34717 A--GATTACCGCACCTTCACCAGTGATTTCATCATCTTTCAATGCCACACCAGCAAACAT 34660 Query 54425 TACAGTACCAGCAGCAGCCAACAGGTCTTTCTGGAGAACAGCTTCAGTCAGCTGTACAGC 54484 | |||||||||| | |||| || | | ||| | ||||||| | ||||| || Sbjct 34659 GATAGTACCAGCACCTTGTAACAACTCAATTTCGAGCATGTCTTCAGTGATTTGTACCGC 34600 Query 54485 ACCGTTCATCAGTTCACGAGACAGGTGTTCTTTCAG--TTGGTCATCAGAATCAAAGTCC 54542 ||| | | ||||||||| || |||| |||| | || |||| ||||||||| Sbjct 34599 ACCTGTTACCAGTTCACGCTGCATATGTTTCATCAGCATCGGG--TCAGTATCAAAGTCG 34542 Query 54543 AGGGACTCTTGAGTAAATTCGTAGAAGAAACCAAACTTATGGATAGAACCTTCACGGGAC 54602 | || |||| ||| | || ||||| ||| | ||| || ||||||| | Sbjct 34541 ATAGAGTCTTTAGTCCACTCACGGAAGATACCCATTTTAGAAATGGAACCTTTGATTTCC 34482 Query 54603 AGACGGGTAAAGCCTACACGGTTAACACGACCACCGTTCTCTGTCAGCAGAGGCAGTTTA 54662 |||||| | || |||||||||||||||||||| | || || |||| |||| Sbjct 34481 AGACGGACAGTACCAACACGGTTAACACGACCACCTTCTTCACCCATGTACGGCATTTTA 34422 Query 54663 GAGGTGATGTTACCAACGTCTCGGGAAGAACCATACAGGTTACCATTAACGATGGTAGCA 54722 ||| |||||||||||| |||||||| || | |||||||| ||| || | Sbjct 34421 TCAAGGATTTTACCAACGTCTTTAGAAGAACCGTATAAGTTACCATCTTTGATTTTAACG 34362 Query 54723 CCATTAGCATCAATACCCTGGTCGTTGATGTTCTTATCATCAAGCAGTGGAACGTA 54778 ||| |||||| ||||| |||||||| | ||| ||||| |||| ||||| ||| Sbjct 34361 CCAGAAGCATCGATACCTTGGTCGTTCACGTTACGGTCATCCAGCAATGGAATGTA 34306 Score = 102 bits (112), Expect = 4e-17 Identities = 142/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 56993 TTCTTCCATAGGGTCTGGCTGTGGTTGCCAAGTACGTAACTCATGAGCCAGGTCAGGCAT 57052 ||||| ||| ||||| ||||||||||| | ||||||| | ||||| ||||||||||| Sbjct 32136 TTCTTGCATTGGGTCAGGCTGTGGTTGGTAGGTACGTAGTTTGTGAGCAAGGTCAGGCAT 32077 Query 57053 ACGTTTA---AGTTCTGCAATCTTAGCTACAAGAGATAA-TGTAATAGTCTGGTCAACCG 57108 |||| | ||||||||| | || | || | ||| | |||||||||||| || | Sbjct 32076 ---TTTACGCAATTCTGCAATATCTGCCAGAA-TGTTAAGGGCAATAGTCTGGTCTACGG 32021 Query 57109 TATTACCCAATGTTTGAACCATGAAGCTCAAGTCCTGTGACTTCTGGTTATCAATTTCAG 57168 ||||||||| || || | |||||| || || |||| ||| |||||| ||| | Sbjct 32020 TATTACCCATAGTCTGTAACATGAATGCCAGTTCTTGTGCTTTCATGTTATCTTCTTCTG 31961 Query 57169 CAGTGTTAATATCAA 57183 | ||| | ||||||| Sbjct 31960 CCGTGGTGATATCAA 31946 Score = 98.7 bits (108), Expect = 5e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 24954 CTGGAAGACAGAATATCTGCATTGACTACTAAAGACCCCCAGAAACTTAAGGTATATACC 25013 || |||||||||||||| || || || ||||||||||| | ||||||||||| ||||| Sbjct 61837 CTTGAAGACAGAATATCCGCTTTAACCACTAAAGACCCTAATAAACTTAAGGTGTATACA 61778 Query 25014 GATGGTTACGATGGTCATAGTCTTCGTGCGTATGCTTACTTTGGTGAGCAGATGCCAGAC 25073 |||||||| ||||| || || | ||||| | |||||| || | |||||||| Sbjct 61777 GATGGTTATGATGGACACTGTTTGCGTGCTTTCTATTACTTCAAAGACCGTATGCCAGAT 61718 Query 25074 ATTGTAGACACAGTTGA 25090 ||||| || || || || Sbjct 61717 ATTGTTGAAACTGTAGA 61701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 227864042740337