Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_024790.1 Length=71778 Score E Sequences producing significant alignments: (Bits) Value seq410 212 3e-50 >seq410 Length=72445 Score = 212 bits (234), Expect = 3e-50 Identities = 631/961 (66%), Gaps = 47/961 (5%) Strand=Plus/Minus Query 66700 CTCTTCCGGGAAGTACATCTTACCAACTTTGAACCATGGAACTACCAGGTTAAAGCGTGA 66759 ||||| || ||| | ||||| ||| ||| |||| || ||| || | |||| Sbjct 22943 CTCTTTAGGAAAGAATATCTTTCCAGTAGCAAACAATGGCACAGCCATCTTCATACGTGT 22884 Query 66760 CAGCTTAGAGGTTACAGGACGGATGCCCGGCT---TACCACCCTCAGAGGATGCAAAGTT 66816 ||| ||| || ||||| | |||||||| | ||| || ||||| ||||||| Sbjct 22883 CAGTTTATCTGTCACAGGTCTAATGCCCGGTTCTTTACGACTACCAGAGCGTGCAAAGGA 22824 Query 66817 AAAGAATACATTACGGTTAATCATTTCTT--TCTGAA-GAAGGGAG---ATGAATCCACC 66870 |||| ||| |||| |||| |||| ||| | | | | ||||| |||| Sbjct 22823 AAAGTATA------GGTTCCTCATCTCTTGTTCTCTACGTATCCAACTAATGAAACCACT 22770 Query 66871 TTGCTGTCCTGTGACCTCGACTCCAACGTTTTGAGGTTGGTATTCTTGAACCAGACGGAA 66930 |||||| ||||| || || || ||||| || || | || ||||||||| | ||| Sbjct 22769 TTGCTGACCTGTTACTTCTACACCAACAGACTGTGGGTTATAAATTTGAACCAGTCTGAA 22710 Query 66931 TAAGTCGTCAAAGTTTTTATCCATAAGCTGACGATTAGCCACACCATCAACCCAGAACCA 66990 ||| || | || ||| ||||| || || | |||||| ||| || |||| Sbjct 22709 TAAATCATTAAGGTTAGCGTCCATCTCTTGTTTCTTGCAAATACCATCTACCAAGTACCA 22650 Query 66991 ATCTCCATTAGAACTATATGCCCAAACTGATATGACACTGTAGTCACTGGTCTGTTTCTC 67050 || || | | | ||| |||||||| ||||||||||||||| ||| ||| Sbjct 22649 ATTACCTTGATAGTCATACGCCCAAACAATAATGACACTGTAGTCAGCACTCTCTTTAGA 22590 Query 67051 CGAAGTAGCAAAGTCAGTTGTAATGTAATAGTTGTAGCAGGACTTCATCCT-TAATAGTT 67109 || ||||||||| || ||||||||||| | || || || ||| || Sbjct 22589 AGAGACAGCAAAGTCTGTGGTAATGTAATAATGATA----------ATTCTGTAACTGTG 22540 Query 67110 GC-TGTCTGCTGTACCATT-TAATCTCGCTATCC--------TGAACAAGACGCTCATCT 67159 | || ||||| | |||| | ||||| |||| | | ||| || Sbjct 22539 TCATGAGATTTGTACGAGAGTAATACTG-TATCCATGACTCTTGAATCATTCTCTCTTCA 22481 Query 67160 TCAGAACTAATACGAAGCATAAGTTCCTGGTAGAAGCCAGCCAGCTTACCAGTCTTAGCT 67219 ||||| |||||| | ||||||||| |||| || | ||||| | | Sbjct 22480 TCAGAGGCAATACGTAACATAAGTTCTTGGTTAAATGATTTAATTCGCCCAGTTCTCACA 22421 Query 67220 GCCATATCGTATTGGGCTTTGATGTAGTCGTAAGAGAAACGGTCATCCCATGCACCCTGA 67279 |||| || || ||| || | | || || ||||| || ||| ||||||||| | Sbjct 22420 GCCAACTCATACTGGCTCTTAACAAATTCATACGAGAATCGCTCAGGCCATGCACCAACA 22361 Query 67280 AACTC---TTCTTCACTGCATGGGAACTTCTCGCATACAGGCCATACGTTCACATCCCAT 67336 || || |||||||| | ||||| ||| || | ||| | ||||| || | ||| Sbjct 22360 AATTCATGTTCTTCAC---AAGGGAAGCGCTCACAGATAGGGTAAACGTTAACGTACCAA 22304 Query 67337 GCACCAGACTCAACTGCTTCTATA-ATAATGTCTTCCTTATTAAAGGGAGTACCATTAAA 67395 | || |||||||| || || ||| | || || | ||||||||| || ||||||||||| Sbjct 22303 CCGCCTGACTCAACGGCCTC-ATATAGAACATCATTCTTATTAAAAGGCGTACCATTAAA 22245 Query 67396 GATTACTTTACGACGGGTAGGGTCAAGAGCATGGTTCACACCTTTATAGACAGTATCCTT 67455 || | || || |||||||| ||||||| ||||| ||||| ||||| ||||| Sbjct 22244 GACAATCTTTTTCTTTGTTGGGTCAAGGGCATGGTCAACACCGTTATACACAGTGTCCTT 22185 Query 67456 AATAGCTTCCATACTCGTCTTAGAGTTAGCATCACCATCACTAATCAAGTCATCCAGTAC 67515 ||| |||||||| || ||||| |||||||| | ||||| | |||||||| ||||| Sbjct 22184 AATCGCTTCCATTTCTGTTTTAGACTTAGCATCCTCGTCACTCACTAAGTCATCAAGTAC 22125 Query 67516 ACAGAGCGTCGGACGTTTACCATATATCTTCGTACCACGAAGACCTGTCTTAGCACCAAA 67575 | || || ||||| |||||||| || || ||||||| | |||||||||||||||||| Sbjct 22124 AGCCAGGGTAGGACGCTTACCATACATTTTATTACCACGGATACCTGTCTTAGCACCAAA 22065 Query 67576 C-AACTTAACACCCAGTCGATGTCCTTCTGCATTACGGAACTCTAACAGGTTATCTGTAA 67634 | ||| ||| || | ||| || || ||||| |||||| | | ||||| |||| Sbjct 22064 CAAACCTAA-TCCAAACTTATGACCATCAGCATTCACGAACTCAATACGCTTATCCGTAA 22006 Query 67635 A 67635 | Sbjct 22005 A 22005 Score = 181 bits (200), Expect = 5e-41 Identities = 665/1021 (65%), Gaps = 43/1021 (4%) Strand=Plus/Minus Query 53811 GCAACAGTCTTAATCAGAGCCAGACGTTCTGGACGTTTAACCAGAATACCGTAGTACCAC 53870 ||||| || ||||||| |||| ||| || | || || | |||||||| ||||| Sbjct 35300 GCAACTGTTTTAATCATCGCCAAACGCTCAGAGCGAAGAATTAACATACCGTACCACCAC 35241 Query 53871 TTGATGGAACTGAAGCCAGTCTCACCATACGGGTCATTACGGTCAGCAGTTTCTCGACCA 53930 || || |||| ||||| | |||||| ||||||| |||||||||||||| | ||| Sbjct 35240 AACATAGAGGTGAATCCAGTTTGACCATATGGGTCATGACGGTCAGCAGTTTGTTCCCCA 35181 Query 53931 GGCATCTTAGTCAT--AATGGAGAACTTA-ACAGACTTACCATCAGTCTGGAAGCCAATG 53987 |||| ||||| || | |||| ||||| || ||| || ||| | ||||||| Sbjct 35180 GGCACTTTAGTAATTGACTGGA--ACTTATACTGACGG-CCTGCAGCTTCAAAGCCAACA 35124 Query 53988 GTAGAGAAGGAGTCATCACCAACTACCAGCATCGGGAATACGTCGTAGTGTTCTTGGCCA 54047 |||| || || || ||||||| |||| ||| ||||| | || || | || | || Sbjct 35123 GTAGTAAATGAACCACCACCAACAACCATCATTGGGAAGATATCATATTTATCGT---CA 35067 Query 54048 CTA--ACCATAGAAGAACGGTAACCTGGGTTAGTAGTAACCTGAGCACCAGCACCTGCCC 54105 | || ||||| ||| | | | | ||| ||| |||||| ||| || Sbjct 35066 GTGTTACGATAGATA----GTATCTTTGTT----AGTTACCGCAGCACCTTTACCAGCAA 35015 Query 54106 AATGAA--GCATCTCAGGAACCTGGATAATACGGAACTTGTCGATACAACCAATTTCGCC 54163 | || |||| || | || | |||||| | | | | |||||| ||| || Sbjct 35014 AGTGTTTCGCATTGAAGTTCACA--ATTACACGGAATGGGCCAACAGAACCAACTTCACC 34957 Query 54164 GTTCATCAGAGTACCAGCATCAGCATAGTGCTGAACCTCAATGAATGCTTTGTTGCCGAA 54223 | | | ||| || |||||||||| || || ||| || ||| || || || Sbjct 34956 ATGTGCGATATGACCTGCCGCAGCATAGTGTTGTACAGGAATAAACGCTGGATTACCAAA 34897 Query 54224 CAGGTCTTTCATCGCTTTCAGTTCTGGA-ACCAGTTCAGAACCAACATACATTACACGAG 54282 |||||||| | | | | | | | |||||| ||| | |||||| ||||| Sbjct 34896 GTTATCTTTCAT-GTTACGAATAGTAGTCAGCAGTTCGTTACCGATATACATATAACGAG 34838 Query 54283 TACCACCAAGTACTTTG-GTATCAGTAAGTTTAGAACCAGTGATAATAGTAGTCTGAGTC 54341 | || | || ||| |||||||| | | |||||| |||||| ||| | | Sbjct 34837 CAG-ACGGAATAGTTTTCGTATCAGTGAATGGAGAACCTTTGATAACGTCAGTGTTACGT 34779 Query 54342 GGGGTACGGTTCTCAGTAAGAATCTGGTCAAGACGCATCAGGTTCTTATAAGAAACTACA 54401 || |||||||| || ||||||| | || | ||| ||| |||| ||||| |||| || Sbjct 34778 GGTGTACGGTTTTCGTTAAGAATATCATCTAAACGTTGCAGATTCTCATAAGTAACTTCA 34719 Query 54402 GAAGGGGTA--GCACCTTCACCAGTGATAGTAGCATCGGAAGTAGCAGCACCTGCATACA 54459 || | || ||||||||||||||||| | |||| || |||| ||| ||| Sbjct 34718 GA--GATTACCGCACCTTCACCAGTGATTTCATCATCTTTCAATGCCACACCAGCAAACA 34661 Query 54460 GTACAGTACCGGCAGCAGCCAACAGGTCTTTCTGGAGAACAGCTTCAGTCAACTGTACAG 54519 | |||||| ||| | |||| || | | ||| | ||||||| | ||||| | Sbjct 34660 TGATAGTACCAGCACCTTGTAACAACTCAATTTCGAGCATGTCTTCAGTGATTTGTACCG 34601 Query 54520 CACCGTTCATCAGTTCACGAGACAGGTGTTCTTTAAG--TTGGTCATCAGAATCAAAGTC 54577 |||| | | ||||||||| || |||| | || | || |||| ||||||||| Sbjct 34600 CACCTGTTACCAGTTCACGCTGCATATGTTTCATCAGCATCGGG--TCAGTATCAAAGTC 34543 Query 54578 CAGAGACTCTTGAGTAAATTCGTAGAAGAAACCGAACTTATGGATGGAACCTTCA----C 54633 | ||| |||| ||| | || ||||| ||| | ||| |||||||||| | Sbjct 34542 GATAGAGTCTTTAGTCCACTCACGGAAGATACCCATTTTAGAAATGGAACCTTTGATTTC 34483 Query 54634 GAGACAGACGAGTAAAGCCTACACGGTTAACACGACCACCGTTCTCTGTCAGCAGAGGCA 54693 |||| ||| |||| || |||||||||||||||||||| | || || |||| Sbjct 34482 CAGACGGAC-AGTA---CCAACACGGTTAACACGACCACCTTCTTCACCCATGTACGGCA 34427 Query 54694 GTTTAGAGGTGATGTTACCAACGTCTCTGGAAGAACCATACAGGTTACCGTTAACGATGG 54753 |||| ||| |||||||||||| | |||||||| || | |||||| | ||| Sbjct 34426 TTTTATCAAGGATTTTACCAACGTCTTTAGAAGAACCGTATAAGTTACCATCTTTGATTT 34367 Query 54754 TAGCACCATTAGCATCAATACCCTGGTCGTTGATGTTCTTATCGTCGAGCAGTGGAACGT 54813 || | ||| |||||| ||||| |||||||| | ||| || || |||| ||||| || Sbjct 34366 TAACGCCAGAAGCATCGATACCTTGGTCGTTCACGTTACGGTCATCCAGCAATGGAATGT 34307 Query 54814 A 54814 | Sbjct 34306 A 34306 Score = 102 bits (112), Expect = 4e-17 Identities = 148/204 (73%), Gaps = 10/204 (5%) Strand=Plus/Minus Query 57020 CTTAAGCTGCTCTTCCATAGGGTCTGGCTGTGGTTGCCAAGTACGTAATTCATGAGCCAA 57079 ||| |||| |||| ||| ||||| ||||||||||| | ||||||| || ||||| | Sbjct 32143 CTTCAGCT--TCTTGCATTGGGTCAGGCTGTGGTTGGTAGGTACGTAGTTTGTGAGCAAG 32086 Query 57080 GTCAGGCATACGTTTAAG---TTCTGCAATCTTAGCTACGAGAGATAACGT-AATAGTCT 57135 ||||||||| |||| | ||||||||| | || | || | ||| | |||||||| Sbjct 32085 GTCAGGCAT---TTTACGCAATTCTGCAATATCTGCCA-GAATGTTAAGGGCAATAGTCT 32030 Query 57136 GGTCAACCGTATTACCCAATGTTTGAACCATGAAGCTCAAATCCTGGGATTTCTGGTTAT 57195 |||| || |||||||||| || || | |||||| || || || | |||| ||||| Sbjct 32029 GGTCTACGGTATTACCCATAGTCTGTAACATGAATGCCAGTTCTTGTGCTTTCATGTTAT 31970 Query 57196 CAATTTCAGCAGTGTTAATATCAA 57219 | ||| || ||| | ||||||| Sbjct 31969 CTTCTTCTGCCGTGGTGATATCAA 31946 Score = 98.7 bits (108), Expect = 5e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 25316 CTGGAAGACAGAATATCTGCATTGACTACTAAAGACCCCCAGAAACTTAAGGTATATACC 25375 || |||||||||||||| || || || ||||||||||| | ||||||||||| ||||| Sbjct 61837 CTTGAAGACAGAATATCCGCTTTAACCACTAAAGACCCTAATAAACTTAAGGTGTATACA 61778 Query 25376 GATGGTTACGATGGTCATAGTCTTCGTGCGTATGCTTACTTTGGTGAGCAGATGCCAGAC 25435 |||||||| ||||| || || | ||||| | |||||| || | |||||||| Sbjct 61777 GATGGTTATGATGGACACTGTTTGCGTGCTTTCTATTACTTCAAAGACCGTATGCCAGAT 61718 Query 25436 ATTGTAGACACAGTTGA 25452 ||||| || || || || Sbjct 61717 ATTGTTGAAACTGTAGA 61701 Score = 82.4 bits (90), Expect = 4e-11 Identities = 172/252 (68%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 28314 ACCTGCTGTAAAACAGCTTCGTCACAAACTACTTATGGCTGGTTGTGGTGCTATTAA-CT 28372 |||||| || ||||| | ||||| | | | | | || || |||||||| | || || Sbjct 56929 ACCTGCCGTGAAACAAATGCGTCATACAGTTTTACTAGCCGGATGTGGTGCGCTAAATCT 56870 Query 28373 TACAGATTGATGAGATTGGTTCCAACCTC--ATTGCCAACGTTGAAGTGCTTAACCTGTT 28430 | || | |||||||||||||| ||| || | || || |||| | | | | || Sbjct 56869 TGAAG-TCGATGAGATTGGTTCAAACATCCAAAAGCAAA--TTGATGCGTTAGGCACATT 56813 Query 28431 CCTTGAGTTGTATGACCAGGGGAAAGTAAAACAGAAGTTAACCAAGAACACTGCTGAAAG 28490 |||||| || |||||| ||| ||| |||| || |||| || |||||| |||| || Sbjct 56812 CCTTGAATTATATGACGTAGGGTTAGTTAAACCTAAACTAACAAAAAACACTTCTGACAG 56753 Query 28491 TGTTCGTGGTGAAGAACTGGATGGTAAGACTCCCGCTAACCTGCTGCTGTTCGGTACTCC 28550 | ||| |||||| | || || | || || ||||| || || ||||||| ||||| Sbjct 56752 TACACGTAATGAAGATATTGACGGAAGAACACCAGCTAATATGTTGATGTTCGGAACTCC 56693 Query 28551 GAGTAAGCTGCT 28562 | ||| |||| Sbjct 56692 GGCTAACTTGCT 56681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 229560007332627