Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq964 114 3e-20 seq1190 95.1 3e-14 >seq964 Length=291957 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| |||||||||||||| ||| ||| || || | ||| Sbjct 216670 AAAACTTTGACCGGAAAAACCATCACTTTGGAAGTTGAACCTTCCGATACCATTGAAAAC 216729 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||| ||| || ||| ||| | | ||||| Sbjct 216730 GTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAACAACGTTTGATCTTT 216789 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || |||||||||||| | || | | ||||||||| ||||||| || ||| Sbjct 216790 GCCGGTAAACAATTGGAAGATGGACGCACCCTTTCGGATTACAACATCCAGAAGGAATCT 216849 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || | || ||| | || || Sbjct 216850 ACTCTCCATTTAGTATTGCGTCTCCG 216875 Score = 96.9 bits (106), Expect = 8e-15 Identities = 146/202 (72%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| || || ||||| || ||| ||| || || | ||| Sbjct 215655 AAAACATTAACGGGTAAAACAATTACATTGGAGGTTGAACCTTCGGATACTATAGAAAAT 215714 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--AT 206300 || ||||| ||| || ||||| |||||||| ||| || || |||| || || || Sbjct 215715 GTTAAAGCTAAA-ATCCAAGACAAAGAAGGTATTCCCCCAGA---TCAACAGCGTTTGAT 215770 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 ||||| || || |||||||||||||| | ||||| ||||||| ||| | || ||||| Sbjct 215771 TTTCGCTGGTAAACAGTTGGAAGATGGCCGCACTTTATCCGATTATAACATTCAAAAAGA 215830 Query 206361 GTCTACTCTTCACCTTGTTTTG 206382 ||||| |||||| | || ||| Sbjct 215831 ATCTACCCTTCACTTGGTATTG 215852 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| |||||||||||||| ||| ||| || || | || Sbjct 216898 AAAACCTTGACCGGCAAAACCATCACTTTGGAAGTCGAACCTTCCGATACCATTGAGAAC 216957 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || || || || || ||||| ||| || || ||| | | |||||| Sbjct 216958 GTAAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCAGATCAGCAACGTTTGATCTTC 217017 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || |||||||||| | || ||| | || |||||| |||| || ||||| Sbjct 217018 GCCGGTAAACAACTGGAAGATGGTCGTACCTTGTCTGACTACAACATCCAAAAGGAGTCC 217077 Query 206365 ACTCTTCA 206372 || || || Sbjct 217078 ACCCTCCA 217085 >seq1190 Length=275307 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || || || || |||||| | || || || || ||| Sbjct 186676 CAGATTTTTGTCAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAGCCGTCCGAC 186735 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| || |||||| || |||||||||||| || || || Sbjct 186736 ACTATTGAAAATGTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCACCAGATCAACA 186794 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | || ||||| ||||| || ||||||||||| | ||| | | |||||||| | Sbjct 186795 ACGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGCCGTACTCTCTCTGATTACAATAT 186854 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || ||| | ||| | || ||| | ||||| Sbjct 186855 TCAAAAAGAATCCACTTTGCACTTGGTATTGCGCCTTCG 186893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181794861618673